Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq34861 145 1e-29 seq28771 140 5e-28 seq50736 116 5e-21 seq32763 91.5 2e-13 >seq34861 Length=230841 Score = 145 bits (160), Expect = 1e-29 Identities = 336/502 (67%), Gaps = 6/502 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 ||| ||| || || |||||| | ||| |||||||| | | | || ||| || | Sbjct 61827 CCAATGGTCTTGTACCAATGTTGAGAGTGTACAATAATACAGCTAGGTATGTTGACCAAG 61768 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | ||||||||||| ||||| ||| | || | ||||| ||||||||||| | || |||| Sbjct 61767 GAGGCAATAAACGACCAGGGGCTTTCGCAATTTACTTAGAACCTTGGCATTCTGATGTTT 61708 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGT 96999 |||| ||| | || || || || |||| ||||||| | |||| || || || | Sbjct 61707 TTGAGTTTTTAGATCTGAAAAAGAATACTGGTAAAGAAGAGGTAAGAGCAAGAGAATTAT 61648 Query 97000 TTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGA 97059 ||||||| | ||| | || ||||| || ||||| || || | | | || |||| Sbjct 61647 TTTATGCTTTATGGATTCCTGATTTATTTATGAACCGTGTTGAAAAAGATGAAATGTGGA 61588 Query 97060 GCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 | |||||||||| || | || ||||| |||| || ||||| ||||| ||||| Sbjct 61587 GTTTAATGTGCCCTCACGATTGCCCTGGTCTTGCCGACTGTTGGGGAGAAGAATTTGAAA 61528 Query 97120 CCAAGTACACG--GCCTACGAGCAAGAGGGCCGATACGTGAGACGAG-TCGATGCACGAG 97176 | | || | | ||||| || || | | ||| | | || |||| || | || Sbjct 61527 C--ATTATATGAAAAATACGAACAGGAAAAGAGGTTCGTTAAGCAAGTTCGA-GCTCAAG 61471 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 ||||||||||||| || | ||| || || || || || || || ||||| || |||| Sbjct 61470 AACTGTGGAAGGCAATAATAGAGGCACAAGTCGAAACAGGCACACCATACATGCTGTACA 61411 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 | ||| | ||| | || || || ||| | | |||||||| || || ||| Sbjct 61410 AAGATTCATGTAATAGAAAAAGTAATCAAAAAAATCTTGGCACCATTAAATGCAGTAATT 61351 Query 97297 TGTGCACGGAAATTGTAGAGTA 97318 |||| || |||||||| || || Sbjct 61350 TGTGTACTGAAATTGTTGAATA 61329 Score = 132 bits (146), Expect = 7e-26 Identities = 306/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || ||||||||||| | || | ||| | || || ||| |||||| |||||||| Sbjct 60835 GCCCCAATGCCCACGGCATCTACAGCACAAATCTTGGGAAATAATGAATCATTTGAACCA 60776 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 || || |||||||| ||||| ||||| |||||||| |||||| | ||| Sbjct 60775 TTTACATCAAACATTTACCAAAGACGTGTTTTATCTGGAGAATTTCAAGTTGTAAACCAT 60716 Query 97920 CACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATC 97979 || ||| | ||||||||| | | |||| ||| | || |||||| | ||| Sbjct 60715 CATTTGTTGCGAGACTTGACGCAGGCAGATCTATGGGATGAAGACATGAAGAATCAGATA 60656 Query 97980 ATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATC 98039 || | |||||||| || |||||||| ||| || || | || | | | | Sbjct 60655 ATTCATAACAATGGTTCTATTCAAAATATTGAGCGGATTCCAAAGGATATTAGACAATTG 60596 Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 || || ||||| ||||| ||| | || || || | |||||||| ||||||||| Sbjct 60595 TATAAAACTGTTTGGGAAATTTCTGTTAAAACAACAATTAAAATGGCTGCTGACAGAGGT 60536 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | || || || |||||||| || || | | || || || || | || | Sbjct 60535 GCATTTATAGATCAAAGTCAATCTTTTAACATTCATGTGGCTGAACCGAATTATGGCAAG 60476 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| ||||| |||||||| |||||||| | ||| || || ||||| ||||| || || Sbjct 60475 TTGACATCGATTCACTTTTATGCATGGAAAATGGGTCTGAAAACGGGAATGTATTACTTG 60416 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 | | ||| | ||| | ||||| || | || ||||| || Sbjct 60415 CGCATAAAACCTGCCGCTAATGCAATTCAGTTCACGGTTGA 60375 >seq28771 Length=922144 Score = 140 bits (154), Expect = 5e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 |||||| | || |||||||| |||| || |||||||||| ||||| | | |||| Sbjct 289488 AATCCAGCTGACAGGAGGATGATAATATGTGCATGGAATCCATCAGATCTTGGTCTAATG 289547 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGC 70312 ||||||||||| || || ||| | |||||| | | ||||| ||||||||||| Sbjct 289548 GCACTACCACCATGCCATTGTCTTATCCAGTTTCATGTGGCAGATGGAGAATTGTCATGC 289607 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 || |||||||| ||||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 289608 TTGATGTATCAAAGGAGCGCGGATATGGGACTAGGTGTGCCTTTTAATATTGCCAGTTAC 289667 Query 70373 TCTATGTTGACGCACATGATTGCTCACATTACCGG 70407 || | || || ||||||||||| || || || || Sbjct 289668 TCACTTTTAACACACATGATTGCACATATAACAGG 289702 >seq50736 Length=1027846 Score = 116 bits (128), Expect = 5e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 126746 TACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGT 126805 |||| || | ||||| || || |||| || |||||||| ||||| || ||||| |||| Sbjct 451904 TACCAAGACGTATGCCACTCGGGTTGAGTGCACTCTTGTCGCCGGGCACCGTGTTCTTGT 451963 Query 126806 TGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACAC 126865 |||| ||||| ||||| || ||||||||||| || || | || || || ||| | | Sbjct 451964 TGCAGGCGATGCTGCATAGCTCGAGGATGCGTTCCGCTCGCGCCCCACTCAGCCCCGCGC 452023 Query 126866 TGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTC 126925 | |||| |||||||| | ||| || ||||| |||||||| || | | | |||||| | Sbjct 452024 TCCGCATGTCCACTAGCACCAGGTGTACATCAGTACCGCCGGTCGCAATGTCGTAGCCGC 452083 Query 126926 GTGA 126929 | || Sbjct 452084 GCGA 452087 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||||||||| || || || ||||||| ||||||| | || ||||||||||| || || Sbjct 452440 TTTGCGGTAGAAAATCACACCGGCTCTTGGACCTCGCAACGTTTTGTGCGTTGTTGTTGT 452499 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGAC 127196 || |||||||||||||| ||||||| ||||| || Sbjct 452500 AACTATGTCACAATACTCGAAGGGGCTTGGAATAAC 452535 >seq32763 Length=482840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 50130 AGAGCTGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAG 50189 |||| ||||| || || || || || | ||||||| | ||||| |||||| | || || | Sbjct 347903 AGAG-TGGCCTGTTGAATACATCATATTCACGGCAGCGTTTCCAAGTGCATTAACTGGCG 347845 Query 50190 CCGATTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGA 50249 | || | | ||||| |||| ||||||||||| || | || ||||| | | ||| Sbjct 347844 CAGACCTATCGATATTTGCAGGCTGCTTTGCCTATATATCTGACGTGTCTTCAATAAAGA 347785 Query 50250 ATCGCACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTG 50309 | | || | ||||||||||| | ||| |||||| || || |||||||| || | Sbjct 347784 ACAGGACATTGAGAGTGGGCATCCTTGATATCGTCTATCTAAGTACGATGCCCGTGGGCG 347725 Query 50310 TGGCGATCGGTA 50321 |||| |||||| Sbjct 347724 TGGCTCTCGGTA 347713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740499051877200