Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq27463 107 1e-18 seq33159 102 6e-17 seq32636 100 2e-16 seq18898 91.5 1e-13 >seq27463 Length=372575 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| || ||||| || || || || || |||||||| || | | | | | Sbjct 145651 CTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCA 145710 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || |||||||| ||| | ||||| | ||| || || |||||| || |||||| Sbjct 145711 TCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTG 145770 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| |||||| |||| || || || ||| || ||||| || || Sbjct 145771 TCTTGAATTTTCGCT-TTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTAT 145829 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || || ||||| || || || ||||| Sbjct 145830 GGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 145865 >seq33159 Length=163697 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || || ||||| || || || || |||||||| || | ||| | || | |||| Sbjct 97912 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGTGTGCGTCCATCTT 97855 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 ||| || ||||| ||| | ||||| | || ||||| ||||| || || ||||| Sbjct 97854 CTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTT 97795 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| ||| |||| || ||||| | || || || || || ||||||| Sbjct 97794 GAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTGATGGTTT 97735 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||| ||||||||||| || |||||| Sbjct 97734 TACCAGTCAGTGTTTTTACAAAGATCTGCATA 97703 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | |||||| Sbjct 98140 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCCATCTTCT 98081 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | ||||| | || ||||| ||||| ||||| ||||| Sbjct 98080 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 98021 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| | || ||||| || || || || | || |||||||| Sbjct 98020 ATTTTAGCT-TTCACATTCTCAATGGTGTCCGAGGGCTCGACTTCCAGAGTGATGGTTTT 97962 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| |||| |||||||| || || |||||| Sbjct 97961 ACCAGTCAAGGTTTTTACGAAGATCTGCATA 97931 >seq32636 Length=346 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || ||||| || ||| || | | | ||||| | |||| Sbjct 298 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGCGACCATCTTCCAGTTGT 239 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | |||| ||| || ||||| ||||| ||||| ||||| || || Sbjct 238 TTGCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTC 179 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || ||||| || | || || || ||||| ||||||||||| || Sbjct 178 GCCTTTACATTCTCAATGGTGTCCGAAGGCTCCACTTCCAAGGTGATGGTTTTACCAGTG 119 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 118 AGGGTCTTCACGAAGATTTGCAT 96 >seq18898 Length=402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || || ||||| ||| ||| | | | ||||| Sbjct 95 ACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCATCTTCC 154 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| |||||| ||| || ||||| ||||| || || ||||| Sbjct 155 AGCTGCTTGCCAGCGAATATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGG 214 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| || || || |||||| || | ||| || || || Sbjct 215 ATCTTAGCCTTCACATTTTCGATAGTGTCAGAGGCTTCTACCTCGAGGGTGATTGTCTTT 274 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || || || |||||||||||||| || || Sbjct 275 CCCGTTAGGGTCTTCACAAAAATTTGCATTTTGGA 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361912281852270