Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq55175 217 1e-51 seq20129 165 7e-36 seq27267 104 2e-17 seq26923 102 7e-17 seq21507 96.9 3e-15 seq27463 95.1 1e-14 seq33159 87.8 1e-12 >seq55175 Length=171662 Score = 217 bits (240), Expect = 1e-51 Identities = 607/923 (66%), Gaps = 19/923 (2%) Strand=Plus/Minus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 ||| ||| | |||| | ||||| ||||| || || | ||| || || | || || || Sbjct 40061 TTCATTTGCTATTTCCCTGTAATCAACAACACCATCCTGCCATGTACCTTTTACTGGTCC 40002 Query 100369 GGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCG 100428 | || |||| ||||| |||| ||| ||||| || || || ||||| ||||| Sbjct 40001 TGTGGCGTTGCCAGTGAATGGATTGTTACCTTCATAACCGTGTACACCAGTCCAGCCGCG 39942 Query 100429 GCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTG-GTTCGTGAGCA 100487 |||||||| || || || || | ||| || |||| ||| || || | || | | Sbjct 39941 TCCGTACATAGCTACACCTACCACAATCTTCTTAGGGTTCACACCTTGAGCAAGTAAATA 39882 Query 100488 ATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAG 100547 ||| || | ||| ||| | || || || || ||||| || || || || | Sbjct 39881 -TTTAACACCAAAATCAGTGGTATAAGTTTCTTTGGGATTCCATGCAGGGGCATATAGGG 39823 Query 100548 TGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAA 100607 || || | || | | ||| |||||||| ||||| || ||||| ||||| || | Sbjct 39822 GAGTCTGATGACCGAGGGTGTCGTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAGGA 39763 Query 100608 ATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGC 100667 | || | || | | |||||| || || ||| | ||| || ||| || || | | Sbjct 39762 AGATGTGGTCCATATACTTTTGGGCTTCGCTGTAATCTACGACTTGAATCTTATCCCATC 39703 Query 100668 CGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGTAGCTGGTCCA 100727 | | ||| || || || | |||||| | || ||||||| |||| || | Sbjct 39702 CAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTACCCGTTTCTTCGGAAAGCTCGTTTA 39643 Query 100728 GCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTC---CCCGT 100784 ||| ||||||| ||||||| || ||| || | | || | || | | Sbjct 39642 ACATTTCGCGCAACTCCTTCATTA----GTTCAACATAAA--CTTCTCCATCTTTCGGGC 39589 Query 100785 TGCCAAGAGTCGGG-TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCG 100843 | ||||| |||||| || || || || ||||| || || ||||| || ||||| || || Sbjct 39588 TACCAAG-GTCGGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATGTCAACACCA 39530 Query 100844 TCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTT 100903 || || |||||||| || | || || || || || || || || | ||| || Sbjct 39529 TCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCACAGAATCAACGAAGCGGTCCCGCTT- 39471 Query 100904 TCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGC 100960 | | | || ||||| |||| || || | | |||||||| || ||||| || Sbjct 39470 --CACTTTGTCAGTGAAAAAGAAGAAAGGATCAGCAAGAGTCCAGCCCCCAATGGAAGGT 39413 Query 100961 AGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTG 101020 || ||||| |||| ||| | || | || | ||| |||||||| |||||||| ||| Sbjct 39412 AGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGACATCAGCTGACCAAAATTGCCTTTG 39353 Query 101021 TACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCG 101080 || || || ||||| | |||| |||||| || || ||||| | || ||||| |||||| Sbjct 39352 TAAGGTTCATTCCAAGAAGACAAGCCCTTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCG 39293 Query 101081 TGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTG 101140 ||||||| || ||||||||| ||| || |||| || ||||| || |||| ||||||| Sbjct 39292 TGAATGGAAACCTTGAAATCTTCACGGCCACTGCATGAACGCTGAAGAGCTTGAAAACTG 39233 Query 101141 CCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCG 101200 || || || | ||| |||| ||| ||||| || ||||| || || || || Sbjct 39232 CCTTCGATTTCCTTTAAACTGTCATTGATGCCATCGCCTCCACAAATTGGAATAAAACCA 39173 Query 101201 TACAACAGATGCGAGAGATTGGG 101223 ||||| ||||| | ||||| || Sbjct 39172 TACAAAAGATGAGTCAGATTAGG 39150 >seq20129 Length=608 Score = 165 bits (182), Expect = 7e-36 Identities = 221/305 (72%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 24831 TGTTTTTTGGTTGTGTCGCGAATTGCACACGATTCGGTCACGACCTTTTGTACATAATCG 24890 |||| ||||| | |||| || | || || | || | || || ||||| || || ||| Sbjct 312 TGTTCTTTGG--GCGTCGAGA-TGGCGCAGGCCTCCGACATCACTTTTTGAACGTAGTCG 256 Query 24891 CGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCAC 24950 |||||||| || ||| | ||||| ||||| | ||||||| ||||||| || | ||| Sbjct 255 CGGCCCTTTACCAGTTGAACGTAAGCGCATCTGTCGAACCAGCGCGCGTGCTGCTCCCAT 196 Query 24951 GGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTG 25010 || |||| || | |||||||| | || || ||||||||||| || ||||| |||| Sbjct 195 GGGACGTCGTCGTTCTCCCAGTCTTTCAGGCCACCGTCGCAGTAGAAGCATTTCGTTTTG 136 Query 25011 TCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAA 25070 || | |||||||||| ||||| || ||||| || | || |||||| |||||||| | Sbjct 135 TCTCCGTGGCCGGTGTAGAAGAAACCGGCTTCCGCCAATTCTTCGGGTTTTTGCTTCATA 76 Query 25071 CCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGCTTCTATCGCATATTTGGGGTGC 25130 | || ||||| ||| | || ||||| | |||||| ||||| || || ||||||| Sbjct 75 CACCGCGGCCAGTCTTTGAAGGTGCGAAGACGCGCCGCTTCGGAGGCGTACCGGGGGTGC 16 Query 25131 GCGGG 25135 |||| Sbjct 15 ACGGG 11 >seq27267 Length=86652 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 || |||||| || ||||| ||||| ||| | | |||| ||| || ||||| | || | Sbjct 7018 GATGTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTCCTGCTT 6959 Query 21198 CGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 | ||||| ||||| |||||||||||||||| ||||| | |||||||||| ||||| Sbjct 6958 GTTGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAATTCGTG 6899 Query 21258 AACGTGAAAGCCGTG 21272 ||||| |||||||| Sbjct 6898 CACGTGGAAGCCGTG 6884 >seq26923 Length=415599 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 25232 CAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTC 25291 ||||||||| ||||| || ||||| || || || || |||||||||||| | | Sbjct 192710 CAAAAACGGACATTGTGGGGCCCAACGCTGGTGGTCTTTCGCAGGGTCGTCGCCCTCGAC 192651 Query 25292 CCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTA 25351 ||||||||| || || ||||| ||||| ||||| || ||||||||||| || || | ||| Sbjct 192650 CCAGCGCATGATTTCGACTTTACAAAAGGCGCAACGAACTTCGTCGCCACGGCCGAGGTA 192591 Query 25352 GTAGAACCCATTGGCGGCCATTTGTCGCGGCGACATAAATTCTACCGTCCAATT 25405 ||||| || ||| || | ||| ||||||| || || || | ||| || Sbjct 192590 ATAGAAGCCGTTGCGCGCGAGCTGTTCGGGCGACAGGAAGTCCACGGGCCACTT 192537 >seq21507 Length=372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||| || | ||||| ||| | |||||||| || || |||||||| || | Sbjct 248 CCACCGCGCAATCTGAGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCTGAG 189 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || ||||||||||||||| | || | || |||||||| ||| Sbjct 188 AGTGTGCGGCCGTCTTCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGGGGG 129 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| ||| || | ||| |||||| ||||| Sbjct 128 ATTCCCTCCTTGTCTTGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCAACC 69 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTA 19054 || | || ||||| || || || | || ||||| ||||| ||||| || | || |||| Sbjct 68 TCTAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGACTC-CTTA 10 >seq27463 Length=372575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/242 (70%), Gaps = 11/242 (5%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || |||||||| | ||| || |||| ||| | || || ||||| || || ||||| ||| Sbjct 145636 TTACCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCC 145695 Query 18872 GCCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | || || |||||| |||| |||||| || || | || | ||| |||||||| Sbjct 145696 GACAAAGT----GCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATC 145751 Query 18928 CACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG 18987 || | |||||||||||| ||||||| |||||| | ||| ||| || ||| Sbjct 145752 TGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTC-AGAGG 145810 Query 18988 C-TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT-TTA 19045 | || || | || ||||||||||| || | ||||| || || || |||||| ||| Sbjct 145811 CTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCATTGTTA 145870 Query 19046 AA 19047 || Sbjct 145871 AA 145872 >seq33159 Length=163697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | ||||| ||| | ||||| || |||||||||||||| || | Sbjct 97474 CCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAA 97415 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || ||||| ||||||||| | ||||| | |||||||| ||| Sbjct 97414 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 97355 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || || || |||||| ||| || | | | || || || ||| Sbjct 97354 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCACC 97295 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || ||||||| ||||| |||||||| |||||| Sbjct 97294 TCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCATT 97247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414267268915180