Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq55175 248 7e-61 seq20129 122 7e-23 seq33159 86.0 5e-12 >seq55175 Length=171662 Score = 248 bits (274), Expect = 7e-61 Identities = 597/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Minus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAA 101077 ||||| ||||| || || | ||| ||||| | || || || | || |||| ||||| Sbjct 40042 TAATCAACAACACCATCCTGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAAT 39983 Query 101078 TAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCC 101137 |||| ||| ||||| || || || ||||| ||||| |||||||| || || || Sbjct 39982 GGATTGTTACCTTCATAACCGTGTACACCAGTCCAGCCGCGTCCGTACATAGCTACACCT 39923 Query 101138 ACAATAATTTTGCGCGGGTCTACGCCCTG-GTTCGTGAGCGATTTAACAGCGTAATCCGT 101196 || | ||| || |||| || || || | || | |||||||| | |||| || Sbjct 39922 ACCACAATCTTCTTAGGGTTCACACCTTGAGCAAGTAAAT-ATTTAACACCAAAATCAGT 39864 Query 101197 GTTGTACAGCTCGTTTGGG-TTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGAT 101255 | | || || | |||||| ||||| || || || || | ||| |||| || || Sbjct 39863 GGTATA-AGTTTCTTTGGGATTCCATGCAGGGGCATATAGGGGAGTCTGATGACCGAGGG 39805 Query 101256 CGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACT 101315 | ||| ||||| || |||||||| ||||| |||||||| || || | || | ||| Sbjct 39804 TGTCGTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACT 39745 Query 101316 TTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTG 101375 |||| || ||| | ||| || ||| || || || | |||||| || | Sbjct 39744 TTTGGGCTTCGCTGTAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGG 39685 Query 101376 TTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAATTCT 101434 | | |||||| | || ||||||| | | || ||||| | |||| ||||||| || Sbjct 39684 TGAGCTCGTATTTCTTACCCGTTT-CTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCC 39626 Query 101435 TTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTT---GTTGCCGAGTGTTGGGTTG 101491 |||| || ||| || | | | || | ||||| | | || || ||||| Sbjct 39625 TTCATTA----GTTCAACATA--AACTTCTCCATCTTTCGGGCTACCAAGGTCGGGGTTA 39572 Query 101492 GCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACC 101551 || || ||||| || || || |||||||||||||| || || || || || ||||| Sbjct 39571 GCTCCCTTACCGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTT 39512 Query 101552 TGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTC-GTGCATATA 101610 || | || ||||| |||||||| || || ||| || | ||| ||| | | Sbjct 39511 TGAAGGAAATCTTTCACAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAG 39452 Query 101611 ATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATT 101670 | |||| || || | | |||||||| || ||||| || | |||||||||| || | Sbjct 39451 A-AGAAAGGATCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCT 39393 Query 101671 GGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGA 101730 || ||| | ||| ||||||||||| ||||||||||| || || ||||||| ||| Sbjct 39392 AGCTTGTTTAAGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGA 39333 Query 101731 TACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATC 101790 | || ||||| || ||||| | || |||||||||||||| || | ||| || ||||| Sbjct 39332 CAAGCCCTTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATC 39273 Query 101791 TGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGC 101850 | |||||| ||| ||||| || | |||| |||||| || || || | Sbjct 39272 TTCACGGCCACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACT 39213 Query 101851 GTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATG 101901 ||| || | ||||||||| |||||||| || || || || ||||| | ||| Sbjct 39212 GTCATTGATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATG 39162 >seq20129 Length=608 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23537 TTGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGC 23596 ||| ||||||||| ||||||||| || | ||||| | ||| | || ||||| || || Sbjct 268 TTGAACGTAGTCGCGGCCCTTTACCAGTTGAACGTAAGCGCATCTGTCGAACCAGCGCGC 209 Query 23597 GTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAA 23656 ||| | ||||| || ||||| | | ||||||||||| ||||| |||||||| | || Sbjct 208 GTGCTGCTCCCATGGGACGTCGTCGTTCTCCCAGTCTTTCAGGCCACCGTCGCAGTAGAA 149 Query 23657 ACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGG 23716 ||||| |||| || | ||||||||| | ||||||||||| || |||| || || Sbjct 148 GCATTTCGTTTTGTCTCCGTGGCCGGTGTAGAAGAAACCGGCTTCCGCCAATTCTTCGGG 89 Query 23717 CTTTTGTTTTAAACTAACCGGCCAATC 23743 ||||| || | || |||||| || Sbjct 88 TTTTTGCTTCATACACCGCGGCCAGTC 62 >seq33159 Length=163697 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | | |||||| || ||||||||||||||||| || ||||| ||| Sbjct 97474 CCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCG--G 97417 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | || |||||| | || || |||||| | ||||| | || ||||| || Sbjct 97416 AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGG 97357 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| || || ||||||| ||| || | ||| | || |||||| Sbjct 97356 GAATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCA 97297 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | || || || || || || | ||||| |||||||| |||||| Sbjct 97296 CCTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCATT 97247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419277973412070