Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq33159 165 2e-35 seq21507 156 1e-32 seq27463 118 2e-21 seq28415 100 7e-16 seq39759 91.5 3e-13 >seq33159 Length=163697 Score = 165 bits (182), Expect = 2e-35 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 |||||||||||| |||||||| ||||| || || || | ||| ||||| || || || || Sbjct 97445 TGTAGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCGAGCTGCTTACC 97386 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||| || || | || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 97385 CGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATTTTTGCTTT 97326 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || ||||| ||||||| ||| |||||||| || || ||||| Sbjct 97325 AACATTCTCAATGGTGTCTGATGGTTCCACCTCTAATGTGATAGTCTTCCCTGTTAGTGT 97266 Query 104542 TTTTACAAATATCTGCATT 104560 ||| ||||| ||||||||| Sbjct 97265 TTTAACAAAAATCTGCATT 97247 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || || | || |||||||| || || || Sbjct 97900 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGTCCATCTTCTAGCTGCTTGCCG 97841 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || || || || || || || || || ||||| || || || Sbjct 97840 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATTTTAGCCTTA 97781 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||| || || || | ||| || || |||||||| |||||| Sbjct 97780 ACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTGATGGTTTTACCAGTCAGTGTT 97721 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 97720 TTTACAAAGATCTGCAT 97704 >seq21507 Length=372 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || || || | ||||| |||||||| ||||| ||||| || || || | ||| Sbjct 236 CTGAGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGGCCG 177 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 |||||||| ||||| || ||||| |||| ||| || ||||| || || ||||| || || Sbjct 176 TCTTCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGGGGGATTCCCTCCTTG 117 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || || || ||||| |||||||| | ||||||| || || |||||||| || || Sbjct 116 TCTTGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCAACCTCTAGAGTGATG 57 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || || || || |||||||| ||| Sbjct 56 GTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 18 >seq27463 Length=372575 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| ||||| | || | || | ||| ||||| ||||| || || ||||| || Sbjct 145639 CCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 145698 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| | || ||||| | ||||| || || || || | || || ||||| || || Sbjct 145699 AAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 145758 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||| || ||||| || |||||||||||||| | || || | ||| ||| Sbjct 145759 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 145818 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || ||||| || || ||||| || || ||||||||| Sbjct 145819 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCATT 145866 >seq28415 Length=359998 Score = 100 bits (110), Expect = 7e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 |||||| || || ||||| ||||| || || ||||||||||| ||||| ||||| || | Sbjct 102237 CCTCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTCTCGAT 102296 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||| ||||| ||||| || || || || || || || || ||||| || || || Sbjct 102297 GGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGAGTTTTCACGAAAAT 102356 Query 104554 CTGCATTTTG 104563 |||||| ||| Sbjct 102357 CTGCATCTTG 102366 >seq39759 Length=128263 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || |||||||| | | ||||||||| ||||| ||||| | || || || | ||| Sbjct 66730 GCATTTTTTGCTGCTTCTGATGGTATAGTTAATGAAAACTTGGTGGAACGATTTTCACAA 66789 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 || || || ||| |||||| || | ||||| |||||||| || ||||| || ||| | Sbjct 66790 GAAGTTCAAATTGGTGAAGCAAGGTTCTTTTATGGATTCCAAATTGCTATGGAGAATGTA 66849 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || |||||||||||| | | || ||||||||||| Sbjct 66850 CACTCAGAGATGTACTCATTGCTGATTGATACTTATAT 66887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150506328902760