Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq57624 111 2e-20 seq25813 87.8 2e-13 >seq57624 Length=486435 Score = 111 bits (122), Expect = 2e-20 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 2779 CGGAACTGCAGGACAAATATTTATAATTTTCCCAGAGGGATGAAA----ATACGGTCAAA 2834 |||||||| |||| |||| ||||||||||| ||||| | | | | |||||| | || Sbjct 339370 CGGAACTGTAGGATCAATAATTATAATTTTCACAGAGAGGTAATACGTAATACGGCCGAA 339311 Query 2835 AACGGGTACTTTGACTTGTGTAAGCCACGCCTCCTTTGGACACTttattaatgaaaatta 2894 |||||||||| | |||| | |||||||| || ||||| | || | ||| ||| ||| Sbjct 339310 AACGGGTACTCTCGCTTGAGCAAGCCACGGCTATTTTGGGCCCTATTACAATAAAATTTA 339251 Query 2895 tttaaaaatattacatataaaatttaagaaatgaaaaaaatCAGAGGCTTACTGGATAGA 2954 |||| | ||||| ||| ||| ||| || | |||| |||| | ||| |||||||| Sbjct 339250 TTTACACGTATTAAATAATAAAATTACGATGTAAAAATAATCTGGCACTTCTTGGATAGA 339191 Query 2955 TAAATGAAAAATAA 2968 | | || | ||||| Sbjct 339190 TGATTGCACAATAA 339177 >seq25813 Length=773957 Score = 87.8 bits (96), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 2780 GGAACTGCAGGAC--AAATATTTATAATTTTCCCAGAGGGATGAAAATACGGTCAAAAAC 2837 ||||||| ||||| | ||||||||||||||||||||||| || ||| |||| | |||| Sbjct 732416 GGAACTGTAGGACCTATATATTTATAATTTTCCCAGAGGGGTGCAAAAACGGCCGAAAAG 732475 Query 2838 GGGTACTTTGACTTGTGTAAGCCACGCCTCCTTTGGACACTt 2879 ||||| ||| |||| | || |||| | ||| |||||||| Sbjct 732476 GGGTAGTTTCGCTTGCGCAACGCACGGCCACTTCGGACACTT 732517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68275429486110