Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq49816 91.5 2e-14 seq1407 86.0 8e-13 seq36886 80.6 3e-11 seq29647 80.6 3e-11 >seq49816 Length=1847 Score = 91.5 bits (100), Expect = 2e-14 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 5399 GTAACCAAATGGTCCGGGTTCGAGTCCCGGTCTGGATTGTCTGAATTATTTTTTCGGTTA 5458 |||||||| | || |||| ||| |||| ||| ||| |||| |||||||||||||| ||| Sbjct 1153 GTAACCAATAGATCTGGGTCCGATTCCCAGTCAGGACTGTCCGAATTATTTTTTCGATTA 1094 Query 5459 CCGAAAAATTCCCACTGAGTTAAGTCCCCTCTTTACCTTCATCCTTT 5505 ||||||| | |||||||| || ||| | |||| ||||||||||| Sbjct 1093 CCGAAAATTATCCACTGAG-TAGGTCTTCCCTTT-TCTTCATCCTTT 1049 >seq1407 Length=132644 Score = 86.0 bits (94), Expect = 8e-13 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 5398 CGTAACCAAATGGTCCGGGTTCGAGTCCC-GGTCTGGATTGTCTGAATTATTTTTTCGGT 5456 ||||||||| | || || | ||| |||| |||| ||| ||||||||||||||||||| | Sbjct 9197 CGTAACCAATAGATCTGGCTCCGATTCCCAGGTCCGGACTGTCTGAATTATTTTTTCGAT 9138 Query 5457 TACCGAAAAATTCCCACTGAGTTAAGTCCCCTCTTTACCTTCATCCTTT 5505 ||||||||| | |||||||| || ||| | |||| | || |||||| Sbjct 9137 TACCGAAAATTATCCACTGAG-TACGTCTACCCTTTCCTTTATTCCTTT 9090 >seq36886 Length=102558 Score = 80.6 bits (88), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 5398 CGTAACCAAATGGTCCGGGTTCGAGTCCCGGTCTGGATTGTCTGAATTATTTTTTCGGTT 5457 ||||||||| | || |||| ||| || | ||| ||| |||| |||||||||||||| || Sbjct 56800 CGTAACCAATAGATCTGGGTCCGACTCTCAGTCCGGACTGTCCGAATTATTTTTTCGATT 56741 Query 5458 ACCGAAAAATTCCCACTGAGTTAAGTCCCCTCTTTACCTTCA-TCCTTTA 5506 |||||||| | ||| |||| || ||| | |||| |||| | ||||||| Sbjct 56740 ACCGAAAATTATCCAATGAG-TAGGTCTTCCCTTT-CCTTAATTCCTTTA 56693 >seq29647 Length=1920 Score = 80.6 bits (88), Expect = 3e-11 Identities = 88/113 (78%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 5398 CGTAACCAAATGGTCCGGGTTCGAGTCCCGGTCTGGATTGTCTGAATTATTTTTTCGGTT 5457 ||||||||| | || | |||||| |||| ||| ||| |||| |||||||||||||| || Sbjct 1159 CGTAACCAATAGATCTGTGTTCGATTCCCAGTCCGGACTGTCCGAATTATTTTTTCGATT 1218 Query 5458 ACCGAAAAATTCCCACTGAGTTAAGTCCCCTCTTTACCTTCA-TCCTTTATTT 5509 || ||||| | |||||||| || || | |||| | |||| |||||| ||| Sbjct 1219 ACAGAAAATTATCCACTGAG-TAGATCTTCCCTTT-CTTTCATTCCTTTCTTT 1269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59897291447910