Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq34861 500 1e-136 seq39759 107 2e-18 >seq34861 Length=230841 Score = 500 bits (554), Expect = 1e-136 Identities = 1191/1794 (66%), Gaps = 22/1794 (1%) Strand=Plus/Plus Query 61977 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62036 |||||| || || | ||||| ||||| | | | || ||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 62037 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62096 |||||||||||||| ||||| | ||||| | ||||| || || || | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 62097 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62156 ||| |||| || || | ||| || || | ||||||||||||||| || || || || ||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 62157 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 62216 || ||||||||||| || | || || | ||||||||||| ||||||||| | | | Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 62217 TTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTA 62273 ||||||| | ||||| | | |||| ||||| || ||| | || ||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGA 60662 Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| || || |||| ||||| | | || || || ||| | | ||| | || Sbjct 60663 TTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTT 60722 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || ||||||||||||||||| || || | | |||||| || ||| | ||||| Sbjct 60723 ACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCA 60782 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | || |||||||||||||| ||||| || || ||||| || ||||| || || | || Sbjct 60783 AATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAA 60842 Query 62454 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513 | ||| | ||| || ||| | ||||| || |||| | ||| | ||| ||| Sbjct 60843 AGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGA 60902 Query 62514 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 62572 || | || ||| | || || | || || | || ||| Sbjct 60903 TCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT-TCC 60961 Query 62573 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 62632 | |||| ||| || ||| | || || || ||||| ||||| || |||||||| || Sbjct 60962 TTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCC 61021 Query 62633 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGG 62692 ||| || || ||||| ||||| | | || || | ||| || || ||| |||| Sbjct 61022 GTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGG 61081 Query 62693 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | || | ||| | || ||||| ||||| || |||||||| || ||||| || Sbjct 61082 AATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTG 61141 Query 62753 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62812 || | | ||||| | | |||||||| | || || || |||| ||| || |||||||| Sbjct 61142 TCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATT 61201 Query 62813 GAGATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871 ||||| | || | | ||| | || || |||| ||| ||||| | || || Sbjct 61202 TAGATTCTGTGTTATTGTCTTCGTG-ACTTCTTTCAATTTTGTAAAATTATATGTTTTAT 61260 Query 62872 CT--ATTA-CAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62928 || |||| |||| | || || |||| || |||| ||||| || || || |||| | Sbjct 61261 CTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTG 61320 Query 62929 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 62988 | | ||||| | || ||||| || | |||||| || || || || || | ||||| Sbjct 61321 CTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTT 61380 Query 62989 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63048 ||||||||| ||| | ||||| | ||| || || || ||| |||| || || ||||| | Sbjct 61381 TTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGA 61440 Query 63049 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTA 63103 || | ||||| || || ||||| | || |||| ||| ||| || | Sbjct 61441 CTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA-----A 61495 Query 63104 TCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63163 ||| |||| ||||||| | ||| ||| ||| || || ||||||||| | | | Sbjct 61496 CCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCGGC 61555 Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 | ||||| || || | || ||||| || |||| | | || | | || || || Sbjct 61556 AAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTT 61615 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 |||||| | |||||||||||| | ||| ||||| ||||| | ||| || || || Sbjct 61616 CATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTT 61675 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || ||||||||||| ||||| | ||| | | || |||||||||||| ||||| ||||| Sbjct 61676 ACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTA 61735 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 || || | | | || || ||||| || ||||| || || | || ||||| || ||||| Sbjct 61736 AATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATT 61795 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 || |||||||||||||| | || ||| || || | || || ||||| | || ||| | Sbjct 61796 GTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGT 61855 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 || | | | ||| | || || || || || || || ||| || ||||| Sbjct 61856 ACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATTAA 61915 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTTAAGTA 63582 ||| ||| ||||||| |||||||| ||||| || ||||||||||| ||| || || | | Sbjct 61916 TGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATG-A 61974 Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 | || || ||| | ||| | | |||| | ||| || || || ||| || | Sbjct 61975 GGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCAT 62034 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 | || || ||||||| || | | ||||| || || || |||| || || || Sbjct 62035 GAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCAC 62094 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63756 ||| || || | | ||| ||||||| ||| ||||| ||||||||| | |||| Sbjct 62095 CATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 Score = 107 bits (118), Expect = 2e-18 Identities = 120/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 63959 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 64018 |||| |||| || ||||| ||||||| ||| |||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 64019 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64078 ||||||||| || | |||||| ||||||||| | || || || | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 64079 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117 || |||||||||||| || ||||| | ||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 107 bits (118), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| |||||| || ||| || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| ||||| || || || ||| |||||||||||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 33446 CAATAAGTCTCTCTCCATAACCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGG 33502 ||| | | || ||| | || | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 |||| || |||||||| || | ||||| || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 33573 ATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGA 33630 ||||||||| |||| || || || ||| || || || | || || || || || || Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 33631 AATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAA 33690 ||||| || || | || || || ||| || |||||| ||||||||||| |||| Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 33691 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 |||||||| ||||| || ||| || |||||||| |||||||||||||| ||||| Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||| ||||| ||||||||||| ||||| || || || ||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| ||| ||||||||| ||||| || || || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 66056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622476329785200