Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq55175 334 7e-87 seq33159 104 2e-17 seq27267 93.3 4e-14 >seq55175 Length=171662 Score = 334 bits (370), Expect = 7e-87 Identities = 798/1199 (67%), Gaps = 18/1199 (2%) Strand=Plus/Plus Query 55818 AAAATCGTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACT 55877 ||| | |||| || || || || || ||||||||||| | |||| || || ||| | Sbjct 39078 AAAGTTGTTGGAGCTTACTTCGTGGAATGGGGTGTTTACCCACGAAAATTCCCAGTCGAT 39137 Query 55878 CGAGTTCCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGC 55937 || | || | |||||||||| | || || | || || || || || || || || ||| Sbjct 39138 CGTATACCAATTCCTAATCTGACTCATCTTTTGTATGGTTTTATTCCAATTTGTGGAGGC 39197 Query 55938 GACGGCATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCG 55997 || ||||| || |||||| | ||| || || |||||| |||| |||||||| || Sbjct 39198 GATGGCATCAATGACAGTTTAAAGGAAATCGAAGGCAGTTTTCAAGCTCTTCAGCGTTCA 39257 Query 55998 TGTTCGGGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAG 56057 || || || || || ||||| || || ||||| || || |||||||| | |||||| Sbjct 39258 TGCAGTGGCCGTGAAGATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAG 39317 Query 56058 CCCCAAAAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATG 56117 || || || || | | ||||| ||||| ||||||||||| ||||| || ||||| Sbjct 39318 CCACAGAAGGGCTTGTCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGATG 39377 Query 56118 GCAGCTAAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTA 56177 | ||||| || | || | ||||| | || ||||| || || ||||||||| | Sbjct 39378 TCCCTTAAACAAGCTAGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTT 39437 Query 56178 TCCGATCCGTTCTTTTACTTTCAC-GATGCGGTCAAACGCAAAATTTTTGTCGATTCTGT 56236 | ||||| ||||| | |||||| || || || || | || || |||||||| Sbjct 39438 GCTGATCCTTTCTTCT-TTTTCACTGACAAAGTGAAGCGGGACCGCTTCGTTGATTCTGT 39496 Query 56237 CGTCGAGTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCC 56296 || || | || |||||||| || ||||||||||| |||||||| ||||| || || Sbjct 39497 GAAAGATTTCCTTCAAACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCC 39556 Query 56297 CGGCGGAAAGGGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACAC 56356 ||||| ||||| || || || || | || | ||||| ||| | | | || | Sbjct 39557 TGGCGGTAAGGGAGCTAACCCCGACCTTGG-TAGCCCGAA--AGATGG--AGAAGTTTAT 39611 Query 56357 GATTCTGTTACGA--GATTTACGCGAAGCGCTAGACCGACTAAGCCTCGAAACGAATCGA 56414 | | | | || || || |||||| | || || || | |||||| | Sbjct 39612 GTTGAACTAATGAAGGAGTTGCGCGAAATGTTAAACGAGCTTTCCGAAGAAACGGGTAAG 39671 Query 56415 ACATACGAGCTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTAC 56474 | ||||||||| ||| || ||||| || || || || || ||||| || ||| Sbjct 39672 AAATACGAGCTCACCTCAGCTATTAGTGCTGGATGGGATAAGATTCAAGTCGTAGATTAC 39731 Query 56475 ACAGCCGCTCAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCT 56534 | | || ||||| ||| | || | || || | |||| ||||| || ||||| || Sbjct 39732 AGCGAAGCCCAAAAGTATATGGACCACATCTTCCTCATGAGTTACGACTTCAAAGGTGCC 39791 Query 56535 TGGTCGAATAGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAA 56594 ||||| || | || || ||||||| | | || || ||||| | ||||| ||| Sbjct 39792 TGGTCCAACGACACCCTCGGTCATCAGACTCCCCTATATGCCCCTGCATGGAATCCCAAA 39851 Query 56595 GAACACTATACGACCGATTTTGCGGTTCGTGCTCTGCTTAAACAAAAAGTCGAGAATAAA 56654 ||| ||||| || ||||||| ||| | | ||| ||| || | ||| Sbjct 39852 GAAACTTATACCACTGATTTTGGTGTTAAATATTTACTTGCTCAAGGTGTGAACCCTAAG 39911 Query 56655 AAGATTGTAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGT---CGGTGATTTC 56711 |||||||| || || |||||||||||||| ||||| ||||| || || |||| || Sbjct 39912 AAGATTGTGGTAGGTGTAGCTATGTACGGACGCGGCTGGACTGGTGTACACGGTTAT--- 39968 Query 56712 GTCGACAAAAACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAA 56771 || ||||||||||| | |||| |||| ||||| || |||||||| ||| | Sbjct 39969 ---GAAGGTAACAATCCATTCACTGGCAACGCCACAGGACCAGTAAAAGGTACATGGCAG 40025 Query 56772 GACGGAGTCGTTGATTTTAGAGAAATTTTCAACTCTTTTGTGACTAACAAACCGATGGAT 56831 || || || ||||||| || ||||| || ||| | |||| | | Sbjct 40026 GATGGTGTTGTTGATTACAGGGAAATAGCAAATGAAATTGCTATGGGCAAATGGGAGTTC 40085 Query 56832 CGTTACGATGCTATAGCAAAAGCGTCATACGTTTTTAATAATTCGACAGGTGATCTCATC 56891 | |||||| | ||| |||| |||| || || | ||||| ||||| || || Sbjct 40086 CATTACGACAACGTTGCAGAAGCCCCATATGTGTTCAGGCCATCGACCGGTGACCTAATA 40145 Query 56892 ACTTACGACAGTCCCCAGTCGGTTCTGGATAAAGCAAAGTATGTGTTAGACTACAACTTG 56951 || ||||||| ||| | ||| | | || |||| ||||||||| | || | || || Sbjct 40146 ACGTACGACAATCCGCGATCGACTATTGAGAAAGGCAAGTATGTGAGAAACAATAAACTG 40205 Query 56952 GGTGGGTTGTTTGCGTGGGAAATCGATGCAGATAACGGATTACTTTTAAACGCAATGAA 57010 || || | || |||||||| ||||||||||| || || ||| |||||||| ||||| Sbjct 40206 GGCGGTCTATTCGCGTGGGAGATCGATGCAGACAATGGCGAACTGTTAAACGCTATGAA 40264 >seq33159 Length=163697 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| |||||| |||| || || | || || | || || || ||| Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAA-CCAT 97305 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | |||||||| ||| | || ||| ||| ||| || || |||||||| || || |||| Sbjct 97306 CAGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATC 97365 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | || | || || | | || ||||| |||||||||| | | | ||| || | Sbjct 97366 AGCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACA 97425 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | |||||||||||||||||| |||| || ||| | | ||||||||||| Sbjct 97426 ATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 >seq27267 Length=86652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 101014 CAAGGCTTACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCACGTCT 101073 || ||| ||||||||| || || |||||||||||||||| | ||||| |||||||| Sbjct 6875 CAGGGCAAACACGGCTTCCACGTGCACGAATTCGGCGACAATACAAACGGGTGCACGTCC 6934 Query 101074 GCGGGCGAACATTTTAA-CCCTACGGGCATGGCTCACGGCGCACCCAACTCTGCCGTTCG 101132 || |||| || || || ||| || ||| || ||||| ||||||| | | |||| || Sbjct 6935 GCCGGCGCTCACTTCAACCCCAACAAGCA-GGAGCACGGTGCACCCACCGCCACCGTGCG 6993 Query 101133 TCACGTCGGTGATCTTGGCAATATTGATGC 101162 ||||| || || || ||||| || || || Sbjct 6994 CCACGTTGGCGACCTCGGCAACATCGAGGC 7023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429619146572850