Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq55175 250 2e-61 seq20129 147 2e-30 seq27267 113 4e-20 seq27463 98.7 8e-16 seq33159 95.1 1e-14 seq26923 93.3 4e-14 seq21507 87.8 2e-12 >seq55175 Length=171662 Score = 250 bits (276), Expect = 2e-61 Identities = 598/898 (67%), Gaps = 25/898 (3%) Strand=Plus/Plus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || || || || |||||||| || ||| || || |||||| | || | || | Sbjct 39090 GCTTACTTCGTGGAATGGGGTGTTTACCCACGAAAATTCCCAGTCGATCGTATACCAATT 39149 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 || ||| || | ||||| ||||| || |||||||| ||||| || ||||| || | || Sbjct 39150 CCTAATCTGACTCATCTTTTGTATGGTTTTATTCCAATTTGTGGAGGCGATGGCATCAAT 39209 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | | ||| || | || ||||||||| | || || || ||||| |||| |||| Sbjct 39210 GA--CAGTTTAAAGGAAATCGAAGGCAGTTTTCAAGCTCTTCAGCGTTCATGCAGTGGCC 39267 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | ||| || |||||| |||||||||| |||||||| || | ||||| || ||||||| Sbjct 39268 GTGAAGATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAGCCACAGAAGG 39327 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 || ||||| | ||||| ||||| ||||||||||| ||||| || ||||| | || Sbjct 39328 GCTTGTCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGATGTCCCTTAAAC 39387 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 || | || || | ||||| |||| || ||||| || ||||| | | ||| ||| Sbjct 39388 AAGCTAGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTTGCTGAT-CCT 39446 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593 || | || | ||| ||| | || ||| || || || ||||| || ||||| || Sbjct 39447 TTCTTCTTTTTCACTGACAAAGTGAAGCGGGACCGCTTCGTTGATTCTGTGAAAGATTTC 39506 Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653 | || ||||| ||||| || || || ||||| |||||||| ||||| ||||| || Sbjct 39507 CTTCAAACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGCGGTAAG 39566 Query 32654 GGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTG--- 32710 || || ||||| | || |||| | || | | | | || |||| ||| Sbjct 39567 GGAGCTAACCCCGACCTTGGTA-----GCCCGAAAGATGGAGAAGT---TTATGTTGAAC 39618 Query 32711 --TTACAAGAATTGCGTTCTATGCTGGACGACCTTCAATTGCAAACGGGCAAAACGTACG 32768 | | || ||||| ||| | |||| ||| ||||||| || | |||| Sbjct 39619 TAATGAAGGAGTTGCGCGAAATGTTAAACGAGCTTTCCGAAGAAACGGGTAAGAAATACG 39678 Query 32769 AGTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATA---TGAAG 32825 || | || || |||||||| || || || ||| || || | || |||| Sbjct 39679 AGCTCACCTCAGCTATTAGTGCTGGATGGGATAAGATTCAAGTCGTAGATTACAGCGAAG 39738 Query 32826 CCGCGCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGT 32885 || |||||||| | || | || || ||||||||||||||||| ||||| || |||| Sbjct 39739 CC---CAAAAGTATATGGACCACATCTTCCTCATGAGTTACGACTTCAAAGGTGCCTGGT 39795 Query 32886 CTAACACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAAT 32945 | ||| | | || ||||||| | | || || || ||||||||| | ||| Sbjct 39796 CCAACGACACCCTCGGTCATCAGACTCCCCTATATGCCCCTGCATGGAATCCCAAAGAAA 39855 Query 32946 TGTACACCACAGATCACGCTGTTAAATTGTTAACAAGTCAAGGTGTAGCTTCTTACAAAA 33005 || ||||| ||| | |||||||| ||| ||||||||| || | || | Sbjct 39856 CTTATACCACTGATTTTGGTGTTAAATATTTACTTGCTCAAGGTGTGAACCCTAAGAAGA 39915 Query 33006 TCATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGTGGCTGGTTATGACGG 33063 | | || || | || |||||||| ||||| ||||| || || |||||||| || Sbjct 39916 TTGTGGTAGGTGTAGCTATGTACGGACGCGGCTGGACTGGTGTACACGGTTATGAAGG 39973 >seq20129 Length=608 Score = 147 bits (162), Expect = 2e-30 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 109222 CCCGTGCATCCCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCT 109281 |||||||| ||| ||||| | |||| || ||| | ||||| || ||| ||||| Sbjct 11 CCCGTGCACCCCCGGTACGCCTCCGAAGCGGCGCGTCTTCGCACCTTCAAAGACTGGCCG 70 Query 109282 CGTGGTTTGAAACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAG 109341 || || |||| || ||||||| || | || || ||||| || | ||||| ||||| Sbjct 71 CGGTGTATGAAGCAAAAACCCGAAGAATTGGCGGAAGCCGGTTTCTTCTACACCGGCCAC 130 Query 109342 GGCGATAAAACCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGAT 109401 || || ||||| ||||| || || || ||||| || |||||||||||||| ||||| Sbjct 131 GGAGACAAAACGAAATGCTTCTACTGCGACGGTGGCCTGAAAGACTGGGAGAACGACGAC 190 Query 109402 GAGCCGTGGAAACTGCACGCGCGTTGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAG 109461 | || ||| | | ||||||||| ||||| ||| | ||| ||||||| || || ||| Sbjct 191 GTCCCATGGGAGCAGCACGCGCGCTGGTTCGACAGATGCGCTTACGTTCAACTGGTAAAG 250 Query 109462 GGTCGAGATTATGTGCAAAAA 109482 || || || || || |||||| Sbjct 251 GGCCGCGACTACGTTCAAAAA 271 >seq27267 Length=86652 Score = 113 bits (124), Expect = 4e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462 |||||| ||||| || ||||| ||| ||| |||| |||||| || || || || || | Sbjct 7015 GTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTCCTGCTTGTT 6956 Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522 |||||| || || |||| || |||||||||||||| || ||||||| || |||||||| Sbjct 6955 GGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAATTCGTGCAC 6896 Query 112523 GTGAAAACCGTG 112534 ||| || ||||| Sbjct 6895 GTGGAAGCCGTG 6884 >seq27463 Length=372575 Score = 98.7 bits (108), Expect = 8e-16 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 115269 TTTATAAGAGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCG 115328 ||| | | || |||| |||||| || || || ||||| |||||||| |||||||| || Sbjct 145882 TTTTTTACAGTTTAACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGT 145823 Query 115329 TCGAAACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAG 115388 | || || || |||||| | | | | |||||| |||||| || ||||| | Sbjct 145822 TAGAGGTTGAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGG 145763 Query 115389 GCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAA 115448 || | || |||||||||||| | || | || |||||||| || ||||||| | Sbjct 145762 GCATTCCACCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCA 145703 Query 115449 CCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAG 115508 | || | || || ||||| || || || || || | || |||| ||||| | |||| Sbjct 145702 CTTTGTCGGACTACAACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAG 145643 Query 115509 GAGGAAA 115515 |||| || Sbjct 145642 GAGGTAA 145636 >seq33159 Length=163697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||| ||||| || || || || || || || | || ||| ||| Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAA-CCAT 97305 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| | || ||| ||||||| ||||| |||||| | ||| |||| Sbjct 97306 CAGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATC 97365 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||| | ||||| | |||||| || || | ||||||| || | |||| || | Sbjct 97366 AGCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACA 97425 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | ||||||||||| ||||| | || ||||| | | ||| ||||||| Sbjct 97426 ATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 >seq26923 Length=415599 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 109044 CAGCGGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGA 109103 || ||| || ||||| | || || ||||||||||| || ||||| ||||| ||||| || Sbjct 192578 CAACGGCTTCTATTACCTCGGCCGTGGCGACGAAGTTCGTTGCGCCTTTTGTAAAGTCGA 192637 Query 109104 AATAATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACA 109163 ||| ||||| ||| | ||||| |||||||| ||| ||||| | | | || ||||| Sbjct 192638 AATCATGCGCTGGGTCGAGGGCGACGACCCTGCGAAAGACCACCAGCGTTGGGCCCCACA 192697 Query 109164 GTGTCCGTT 109172 |||||||| Sbjct 192698 ATGTCCGTT 192706 >seq21507 Length=372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 115273 TAAGAGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGA 115332 |||| || | || ||||| ||||| ||||| || |||||||| || ||||| || | || Sbjct 10 TAAG-GAGTCAAGATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACCATCACTCTAGA 68 Query 115333 AACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGT 115392 ||| || ||| || | | | | || ||| ||||| || || || || | Sbjct 69 GGTTGAGCCCTCCGATACCATCGAAAATGTGAAAGCCAAAATCCAAGACAAGGAGGGAAT 128 Query 115393 CCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCAT 115452 |||| ||||||||||| | || | |||||| ||||| ||||||| | | || | Sbjct 129 CCCCCCAGATCAGCAAAGGTTAATCTTTGCGGGTAAACAGCTAGAAGACGGCCGCACACT 188 Query 115453 GGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | || || || || || ||||||||||| | || ||||| | |||||||| || || Sbjct 189 CTCAGACTACAATATCCAGAAAGAGTCTACCCTCCACCTGGTGCTCAGATTGCGCGGTGG 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425030530776400