Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq28822 174 1e-38 seq27463 122 6e-23 seq33159 113 3e-20 seq59663 84.2 1e-11 seq30673 84.2 1e-11 >seq28822 Length=296849 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| |||||| | ||||||| || || || |||||||||||||||||||||||||| || Sbjct 280525 CACCATGGGGTCTTTGAACGTGAACCGGAACGTGGCGGACGCGTTCTACCGCTACAAGAT 280584 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 ||||||||||||||||||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 280585 GCCGCGCATCTGCGCCAAGGTGGAGGGCAAGGGCAACGGCATCAAGACTGTCATTGTCAA 280644 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 |||||| || || || |||||||| || | || || |||| Sbjct 280645 CATGCCCGAGGTGGCCAAGGCGCTGGGCAGGCCCGCTACCT 280685 Score = 167 bits (184), Expect = 2e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || |||||||||||||||||||| | ||| ||||| ||||||||||| ||||| || ||| Sbjct 281087 TTCATTCGCAAGTTTGTGCTGTGCCCGGAGTGCGACAACCCGGAGACGGAGCTGATCGTG 281146 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || || |||| || | |||||| ||||||||||| |||||||| ||||| ||| ||| Sbjct 281147 TCCACGAAGAAGAATAGCATCTCGCAGGGCTGCAAGGCGTGCGGCTACCACGGCGCGCTC 281206 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAAAGACCCTAGC 6617 || || ||||| ||||||||||||||||||||||| || || | ||||| ||| Sbjct 281207 GAGTTCAACCACAAGCTCAACACCTTCATACTGAAGAACCCGCCCGCCGCGGACCCCAGC 281266 Query 6618 ACGCAGG 6624 ||||| Sbjct 281267 GTGCAGG 281273 Score = 86.0 bits (94), Expect = 4e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 6987 AAGGCGCCGCTGGTGCTTTTTGAGGTGCTGGTGCGTCCGGCCGCGCTGGCGTGCGATGTG 7046 || |||||||||||| | || |||||||||||||| |||| | ||||| || ||| ||| Sbjct 283333 AAAGCGCCGCTGGTGGTGTTCGAGGTGCTGGTGCGGCCGGGCTCGCTGTCGGCCGACGTG 283392 Query 7047 CGCAAGTACCGCGCGCTGTTGCTGCGCTTTACGCAACATGACCCGCGCGCGCAACGCGCC 7106 || | || ||||| ||||||| | |||| || ||||| ||||| |||||| Sbjct 283393 AAGAAACAGCGGCCGCTGCTGCTGCGTCTGACGCGCGGCGAGCCGCGGGCGCAGCGCGCC 283452 Query 7107 GTTCTCA 7113 || |||| Sbjct 283453 GTGCTCA 283459 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 6751 ACGACGACGGCATCTGGACCGTTGACGTCAGCGAGGCCGCCGTGCGCGCGCGCATGCAA 6809 |||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||| Sbjct 282619 ACGACGACGGCACCTGGACCGTCGACGTCAGCGAGGAGGCTGTGCGCGCGCGCATGCAA 282677 >seq27463 Length=372575 Score = 122 bits (134), Expect = 6e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38083 AATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 || ||||||| |||| | | ||| ||||| ||||| || ||||| || || |||| Sbjct 145631 AAACATTACCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGT 145690 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 | || |||||| ||| | || || || ||||| ||||| || || | | ||| |||| Sbjct 145691 AGTCCGACAAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGAT 145750 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 | | || | ||| |||||||| |||||| || ||||| | || ||| || Sbjct 145751 CTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGG 145810 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| ||||| || || ||||||||||| | |||||| ||||| |||||||| Sbjct 145811 CTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 145865 >seq33159 Length=163697 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | || ||||| || ||| |||||| || || || || || | Sbjct 97704 TACCACCACGCAGACGGAGTACTAAATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTG 97645 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || ||||| || || || ||||| || | ||||| || || | || Sbjct 97644 AGAGTGTGCGTCCATCTTCTAACTGCTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGGG 97585 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| ||||| ||| ||||||| || ||||| | ||||| Sbjct 97584 GAATACCTTCCTTATCCTGGATTTTAGCCTTGACATTCTCGATGGTATCCGAAGGTTCAA 97525 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||| || || || |||||||||||||| ||||| || || |||||| Sbjct 97524 CTTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATTTGCATG 97475 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| ||||| | || || |||||||| ||||| || |||||||| | Sbjct 97250 CATT-CCTCCTCTTAAACGGAGGACTAAGTGAAGAGTAGATTCCTTCTGGATATTGTAGT 97192 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| |||| | || || || ||||| |||||||| || | | || || || | Sbjct 97191 CTGACAATGTACGTCCATCCTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTG 97132 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| || || || || ||| ||||| | | || || || Sbjct 97131 GGGGAATGCCTTCCTTATCTTGGATCTTCGCCTTAACATTTTCAATTGTGTCGGAGGGTT 97072 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||| || || || || ||||||||||| ||||| |||||||| Sbjct 97071 CAACTTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACGAAAATCTGCAT 97020 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||| | |||||| ||||| || || |||||||||||||| || || Sbjct 97474 CCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAA 97415 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || ||||| ||||| | ||| Sbjct 97414 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 97355 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||||||| || ||||||| | || ||| ||| || Sbjct 97354 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCACC 97295 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || || || | ||||| || || |||||||| Sbjct 97294 TCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | |||||||||||| || |||||| || || ||||| ||||| | ||| | Sbjct 98147 ACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCC 98088 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || |||| || || ||||| || || | | || || || | ||| | |||||| || Sbjct 98087 ATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 98028 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| ||||| |||||||||| | || || || ||||| | || || Sbjct 98027 GTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACTTCCAGAGTGAT 97968 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| ||||| |||||||| Sbjct 97967 GGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 >seq59663 Length=484 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 5/66 (8%) Strand=Plus/Plus Query 25931 AGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGA 25985 ||| ||||||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 270 AGAGAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 329 Query 25986 TGACGA 25991 |||||| Sbjct 330 TGACGA 335 >seq30673 Length=236 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 5/66 (8%) Strand=Plus/Plus Query 25931 AGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGA 25985 ||| ||||||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 57 AGAGAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 116 Query 25986 TGACGA 25991 |||||| Sbjct 117 TGACGA 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334700351240570