Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq34861 508 7e-139 seq39759 105 8e-18 >seq34861 Length=230841 Score = 508 bits (562), Expect = 7e-139 Identities = 1195/1796 (67%), Gaps = 26/1796 (1%) Strand=Plus/Plus Query 61832 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 61891 |||||| || || | ||||| ||||| | | | || ||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 61892 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 61951 |||||||||||||| ||||| | ||||| | ||||| || || || | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 ||| |||| || || | ||| || || | ||||||||||||||| || || || || ||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 62071 || ||||||||||| || | || || | ||||||||||| ||||||||| | | | Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 62072 TTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTA 62128 ||||||| | ||||| | | |||| ||||| || ||| | || ||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGA 60662 Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| || || |||| ||||| | | || || || ||| | | ||| | || Sbjct 60663 TTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTT 60722 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || ||||||||||||||||| || || | | |||||| || ||| | ||||| Sbjct 60723 ACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCA 60782 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | || |||||||||||||| ||||| || || ||||| || ||||| || || | || Sbjct 60783 AATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAA 60842 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 | ||| | ||| || ||| | ||||| || |||| | ||| | ||| ||| Sbjct 60843 AGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGA 60902 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 62427 || | || ||| | || || | || || | || ||| Sbjct 60903 TCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT-TCC 60961 Query 62428 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 62487 | |||| ||| || ||| | || || || ||||| ||||| || |||||||| || Sbjct 60962 TTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCC 61021 Query 62488 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC--TTGCGCTTCCAGGCTATCAAAT 62545 ||| || || ||||| ||||| | | || || | ||||| | || || ||| || Sbjct 61022 GTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCA--CTTTCATAT 61079 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 ||| | || | ||| | || ||||| ||||| || |||||||| || ||||| Sbjct 61080 GGAATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTG 61139 Query 62606 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 |||| | | ||||| | | |||||||| | || || || |||| ||| || |||||| Sbjct 61140 TGTCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTA 61199 Query 62666 TTGAGATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC 62724 || ||||| | || | | ||| | || || |||| ||| ||||| | || Sbjct 61200 TTTAGATTCTGTGTTATTGTCTTCGTG-ACTTCTTTCAATTTTGTAAAATTATATGTTTT 61258 Query 62725 ATCT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 |||| |||| |||| | || || |||| || |||| ||||| || || || |||| Sbjct 61259 ATCTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATC 61318 Query 62782 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841 || | ||||| | || ||||| || | |||||| || || ||||| || | ||| Sbjct 61319 TGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATT 61378 Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 || ||||||||| ||| | ||||| | ||| || || || ||| |||| || || ||||| Sbjct 61379 TTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTC 61438 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTG 62956 | || | ||||| || || ||||| | || |||| ||| ||| || Sbjct 61439 GACTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA---- 61494 Query 62957 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63016 | |||||||| ||||||| | ||| ||| ||| || || ||||||||| | | Sbjct 61495 -ACCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTCG 61553 Query 63017 TCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63076 | || ||||| || || | || ||||| || |||| | | || | | || || Sbjct 61554 GCAAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGG 61613 Query 63077 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCG 63136 |||||||| | |||||||||||| | ||| ||||| ||||| | ||| || || Sbjct 61614 TTCATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCT 61673 Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || ||||||||||| ||||| | ||| | | || |||||||||||| ||||| ||| Sbjct 61674 TTACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAG 61733 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || || || | | | || || ||||| || ||||| || || | || ||||| || ||| Sbjct 61734 TAAATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTA 61793 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || || |||||||||||||| | || ||||||||| || || || || | || ||| Sbjct 61794 TTGTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAG 61853 Query 63317 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 | || | | | ||| | || || || || || || || ||| || ||| Sbjct 61854 GTACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAATT 61913 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAG 63435 ||||| ||| ||||||| || ||||| || || || || |||||||| ||| || || | Sbjct 61914 AATGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATG 61973 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || || || ||| | ||| | | |||| | ||| || || || ||| || Sbjct 61974 -AGGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGC 62032 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 ||||| || ||||||| || | | ||||| || || || |||| || || || Sbjct 62033 ATGAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTC 62092 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 ||| || || | | ||| ||||||| ||| ||||| ||||||||| | |||| Sbjct 62093 ACCATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 Score = 113 bits (124), Expect = 6e-20 Identities = 121/159 (76%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| |||| || ||||||||||||| ||| |||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 ||||||||| || | |||||| ||||||||| | || || || | | |||||||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 || |||||||| ||| || ||||| | |||||| || Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 32930 ATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGA 32987 ||| |||||||||| || || || ||| || || || | || || || || ||||| Sbjct 66885 ATAAGTATCAATCAGCAATGAGTA--CATCTCTGAGTGTACATTCTCCATAGCAATTTGG 66828 Query 32988 AATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA 33047 ||||| || ||| | || || || ||| || |||||| |||||||||| | || Sbjct 66827 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAG 66768 Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||||||| ||||| || ||| || |||||||| |||||||||||||| ||||| Sbjct 66767 TTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||| ||||| || ||| || || || |||||||| | ||| ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| ||||| || ||||| ||| |||||||| ||||||||||| || ||||||| Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 32803 CAATAAGTCTCTCTCCATAACCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGG 32859 ||| | | || ||| | || | | | || ||||| | | ||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||| || |||||||| || | || || || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Score = 89.7 bits (98), Expect = 7e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||||||||| ||||||||||| ||||| || || || ||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGGAT 33265 ||||| ||| ||||||| || || || || || || | ||||||| |||| || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAAACGCCGCGGATTTTCACGCAA-GAG 66032 Query 33266 TGGTTCCA 33273 |||||||| Sbjct 66031 TGGTTCCA 66024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633153053412000