Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq55175 342 4e-89 seq18898 125 6e-24 seq27463 123 2e-23 seq33159 120 3e-22 seq36087 113 4e-20 seq24526 86.0 5e-12 >seq55175 Length=171662 Score = 342 bits (378), Expect = 4e-89 Identities = 675/994 (68%), Gaps = 25/994 (3%) Strand=Plus/Minus Query 57178 ATTTCGCTTGCAATTTGCTTGTAATCAACCACGCCTTCCTCCCACGTGCCGTGCACAGGC 57237 ||||| |||| |||| | |||||||||| || || |||| ||| || || | || || Sbjct 40063 ATTTCATTTGCTATTTCCCTGTAATCAACAACACCATCCTGCCATGTACCTTTTACTGGT 40004 Query 57238 CCACTTCCTTTACCCGTGAACGGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCT 57297 || | | || || ||||| |||||||| | || |||| ||||| ||||| || Sbjct 40003 CCTGTGGCGTTGCCAGTGAATGGATTGTTACCTTCATAACCGTGTACACCAGTCCAGCCG 39944 Query 57298 CGACCGTACATGGCCACGCCAACCACTATTTTGTCAGCGGACACGTTCTGCGCTAACAAA 57357 || |||||||| || || || ||||| || || | || | ||| || || | ||| Sbjct 39943 CGTCCGTACATAGCTACACCTACCACAATCTTCTTAGGGTTCACACCTTGAGCAAGTAAA 39884 Query 57358 GTGCGTACAGCATTGTCTGTGGTATATGGTTCGCTAGGGTTCCACAGAGGCGCATAAATG 57417 ||| || || |||||||| | ||| | || ||||| ||| ||||| | | Sbjct 39883 TATTTAACACCAAAATCAGTGGTATAAGTTTCTTTGGGATTCCATGCAGGGGCATATAGG 39824 Query 57418 TTGGTTTGATAGCCCAAATTTGT-GTTACTCCAGGCACCTTTAAAATCGTACGACATTAA 57476 || |||| | || | ||| ||| |||||||||||| || ||||| ||| | Sbjct 39823 GGAGTCTGAT-GACCGAGGGTGTCGTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAG 39765 Query 57477 GAATATGCTGTCGAGATATTTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATT 57536 ||| ||| ||| | ||| ||||| || | ||||||| || | || || ||||| Sbjct 39764 GAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTAATCTACGACTTGAATCTTATCCCA 39705 Query 57537 ACCGGCGCCGATGGCTGTTGTGAGCAATAGTTTACGATCAGTTTCCAGTTCCAA---CTC 57593 || || | || |||| |||||| ||| | | ||||| ||| | ||| Sbjct 39704 TCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTACCCGTTTC---TTCGGAAAGCTC 39648 Query 57594 GTCCAACATTAATCTCAAATCTTTCAATAGCCGCACGTATGTTTCTCCGTC------GCG 57647 || |||||| | ||| || |||| ||| || || |||||| || || Sbjct 39647 GTTTAACATTTCGCGCAACTCCTTCATTAGTTCAACATAAACTTCTCCATCTTTCGGGCT 39588 Query 57648 ACCAGGGTCGCCCAACAAAGGATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTC 57707 |||| ||||| || ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 39587 ACCAAGGTCG---------GGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATGTC 39537 Query 57708 GACTCCATCAAAAAATTTCCACACTTTGATGTAGTCGCGCACCGATTGCACAAAAGTGTT 57767 || ||||| || || ||||| || | | | || ||| || | || || || Sbjct 39536 AACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCACAGAATCAACGAAGCGGTC 39477 Query 57768 GCGAATAGTGTCGTC-GTGCATGAAAAAGAAGGGATCCGATAAGGTCCAACCACCAATGG 57826 || | | ||| ||| | || ||||| ||||| | | ||||| || ||||||| Sbjct 39476 CCGCTTCACTTTGTCAGTGAAA-AAGAAGAAAGGATCAGCAAGAGTCCAGCCCCCAATGG 39418 Query 57827 ATGGCAATACTTTTAGATGCGGATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTAC 57886 | || | | ||| || | ||| |||| ||| | | |||||| ||||||||||| | Sbjct 39417 AAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGACATCAGCTGACCAAAATTGC 39358 Query 57887 CTTTGTAAGGTTCGTTCCAAGCCGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAG 57946 ||||||||||||| ||||||| || | || | || |||||||| || || ||||||| Sbjct 39357 CTTTGTAAGGTTCATTCCAAGAAGACAAGCCCTTCTGTGGCTTTTGAAGAGCAGCCCAAG 39298 Query 57947 GATCGTGTATCGTTACTTTGAAATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAA 58006 ||||||| || | || ||||||||||| ||||| || ||||| || | |||| || Sbjct 39297 GATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTGCATGAACGCTGAAGAGCTTGAA 39238 Query 58007 AACTACCTGTAATCGTCTTTAGACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGA 58066 |||| ||| || ||||| |||||| ||||||||||||||||| ||||| || | | Sbjct 39237 AACTGCCTTCGATTTCCTTTAAACTGTCATTGATGCCATCGCCTCCACAAATTGGAATAA 39178 Query 58067 AACCGTACAACAAATGAGTCAAATTGGGTACGGGTACTTTATCAACTGGATATTTACGAC 58126 |||| ||||| | |||||||| ||| || | |||| ||| ||||| |||| || Sbjct 39177 AACCATACAAAAGATGAGTCAGATTAGGAATTGGTATACGATCGACTGGGAATTTTCGTG 39118 Query 58127 CGTACACACTCCACTCCACGAAATAAGCTCCCAC 58160 ||| |||| ||| |||||||| |||||||| || Sbjct 39117 GGTAAACACCCCATTCCACGAAGTAAGCTCCAAC 39084 >seq18898 Length=402 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || || | ||||| |||| || || | || Sbjct 304 AATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACAATCACCCTCGAGGTAGAAGCCTC 245 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| ||||| || ||| ||||| || || ||||| |||||||| Sbjct 244 TGACACTATCGAAAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATTCCTCCTGACCA 185 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | ||||||| ||||||| | ||| ||||| Sbjct 184 GCAGCGTCTGATATTCGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGACTACAA 125 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||| || || ||||| || || || || |||||| Sbjct 124 TATCCAGAAGGAATCTACCCTTCACTTGGTGCTA 91 >seq27463 Length=372575 Score = 123 bits (136), Expect = 2e-23 Identities = 172/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || || || || | || |||||| |||| || | || || || | Sbjct 145869 AACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 145810 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||||||||||| | || |||| |||| ||| |||||||| || |||||||| Sbjct 145809 CTCTGACACTATCGAA--AATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCACC 145753 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || | | || || ||||||||||| || ||||||| |||||| || || Sbjct 145752 AGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCGGA 145693 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || || || ||||| || || || || || | ||||| ||||||| ||| Sbjct 145692 CTACAACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGGTAAT 145635 >seq33159 Length=163697 Score = 120 bits (132), Expect = 3e-22 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || || || | |||||| | || ||||| | || Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| | || ||||||||| ||| || || ||||| ||||| || || Sbjct 97307 AGACACCATTGAG--AATGTTAAAGCAAAAATTCAA-GATAAGGAAGGCATTCCCCCAGA 97363 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| ||||| || || || | ||||||| |||||| | ||| || Sbjct 97364 TCAGCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTA 97423 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||||| || || || || ||||| | | |||||||| Sbjct 97424 CAATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || |||||||| | ||||| || | || Sbjct 97020 ATGCAGATTTTCGTCAAAACCTTGACTGGGAAGACCATCACATTGGAAGTTGAACCCTCC 97079 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || || ||||| ||||| || ||||| Sbjct 97080 GACACAATTGAAAATGTTAAGGCGAAGATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 97139 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| || || |||| || || || || |||||| Sbjct 97140 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAGGATGGACGTACATTGTCAGACTACAAT 97199 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||| || || || ||||| || | |||||||||||| Sbjct 97200 ATCCAGAAGGAATCTACTCTTCACTTAGTCCTCCGTTTAAGAGGAGGAA 97248 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | || |||||| | || Sbjct 96792 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCTTGGAGGTGGAGCCTTCG 96851 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| || | || ||||| || || ||||| || ||| Sbjct 96852 GACACAATTGAA--AATGTTAAAGCTAAGATCCAG-GACAAGGAGGGCATTCCCCCAGAC 96908 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || ||||||||||| | || |||| ||| || | || ||| Sbjct 96909 CAGCAGAGGTTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACACTCTCTGACTAC 96968 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || || || ||||| | ||| | ||||| Sbjct 96969 AACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCCGTCTACGTGGAGG 97018 >seq36087 Length=321 Score = 113 bits (124), Expect = 4e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || ||||| || || | || || || ||||||| | ||||||||| | ||||| Sbjct 1 GCAGATCTTTGTGAAAACGCTTACGGGCAAGACCATCACGTTGGAAGTGGAGCCATCTGA 60 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 |||||| || ||||| |||||| ||||| || || || || |||||||| || Sbjct 61 CACTATTGAAAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCA 120 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 ||| | || || || || ||||| | || |||| ||||||| | || |||||||| Sbjct 121 GCGACTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTCTCTGACTACAATAT 180 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || |||||||| | || || |||| || Sbjct 181 CCAGAAGGAGTCCACTCTGCATTTAGTTTTGAGACTGCGAGGTGG 225 >seq24526 Length=484089 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 51124 CTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCAT 51183 ||||||||||| || | |||| ||||| | ||| |||| ||| ||||||||| Sbjct 59341 CTGTAATGATCATTCAAGTATATCGCATATTTAAGTGCATCCTCTGGACTTGGCGTCCAT 59282 Query 51184 TCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGCAACGA 51243 || | ||| ||||| |||||||||||| | | | || ||||||||||| || Sbjct 59281 TCTAGAATCTTCTTACACCAGTACATGCGGAGGAAGCCATGCATCTTGCCTTCCTTTACC 59222 Query 51244 AGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTT 51283 | |||| ||| || |||||||||| ||| || || |||| Sbjct 59221 ATCTGCAGTTGTGCAGAGTTCCACAGTTCATCATGGGTTT 59182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433008646743050