Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq55175 235 6e-57 seq20129 141 1e-28 seq27267 109 6e-19 >seq55175 Length=171662 Score = 235 bits (260), Expect = 6e-57 Identities = 580/870 (67%), Gaps = 15/870 (2%) Strand=Plus/Minus Query 51575 CCAGCCGCGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTC 51634 ||||||||| ||||||| || || || || || ||||||| | | ||| || || | Sbjct 39950 CCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTTCTTAGGGTTCACACCTTGAGC 39891 Query 51635 GAGAAGCGACGACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGC 51694 || | | || || | || ||||| || |||| | ||| |||||| || || Sbjct 39890 AAGTAAATATTTAACACCAAAATCAGTGGTATAAGTTTCTTTGGGATTCCATGCAGGGGC 39831 Query 51695 GAACAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTT 51754 | || | ||||| | || || | ||||||||| ||||| ||||| ||||| | Sbjct 39830 ATATAGGGGAGTCTGATGACCGAGGGTGTCGTTGGACCAGGCACCTTTGAAGTCGTAACT 39771 Query 51755 CATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTT 51814 ||||||||| |||| |||| | | | || || ||| || ||||||||||| || Sbjct 39770 CATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTAATCTACGACTTGAATCTT 39711 Query 51815 ATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTA---CGAACGGTTCGTGGCGGCGCT 51871 ||| | || || || || || ||| | | ||| | || ||| | || Sbjct 39710 ATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTACC---CGTTTCTTCGGA 39654 Query 51872 CAACTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCG 51931 | ||||| | ||| ||||||| ||| ||| || || || | ||||| Sbjct 39653 AAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGTTCAACATAAACTTCTCCATCTT- 39595 Query 51932 ATCGGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTC 51991 ||||| | || |||||||| || || || || ||||| || || ||||| |||| ||| Sbjct 39594 -TCGGGCTA-CCAAGGTCGGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATGTC 39537 Query 51992 GACTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAG--GTT 52049 || || |||||||||||||| || | || || || || || || |||||| || Sbjct 39536 AACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCACAGAATCAACGAAGCGGTC 39477 Query 52050 GCGCGTTTGCTCGCGTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGAT 52108 ||| || || ||| ||| | |||||||| ||||| | || ||||| || || || Sbjct 39476 CCGC-TTCACTTT-GTCAGTGAAA-AAGAAGAAAGGATCAGCAAGAGTCCAGCCCCCAAT 39420 Query 52109 CGAGGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTT 52168 || || || || || || || | || |||| | ||||||||| ||||| || Sbjct 39419 GGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGACATCAGCTGACCAAAATT 39360 Query 52169 TCCCTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCA 52228 || ||||| || || ||||| | || | ||| ||||| || || || || || ||||| Sbjct 39359 GCCTTTGTAAGGTTCATTCCAAGAAGACAAGCCCTTCTGTGGCTTTTGAAGAGCAGCCCA 39300 Query 52229 GGGATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTC 52288 ||||||||||| | ||||| || || | ||| ||| || || || | |||| Sbjct 39299 AGGATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTGCATGAACGCTGAAGAGCTTG 39240 Query 52289 GAAACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAAT 52348 |||||| ||||| || | ||||| |||||||| |||||||| || || ||||| Sbjct 39239 AAAACTGCCTTCGATTTCCTTTAAACTGTCATTGATGCCATCGCCTCCACAAATTGGAAT 39180 Query 52349 GAAGCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCG 52408 || || |||| ||||| | ||| || || | || | |||| || || || || || Sbjct 39179 AAAACCATACAAAAGATGAGTCAGATTAGGAATTGGTATACGATCGACTGGGAATTTTCG 39120 Query 52409 CAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 |||||| |||||||| || ||||| || Sbjct 39119 TGGGTAAACACCCCATTCCACGAAGTAAGC 39090 >seq20129 Length=608 Score = 141 bits (156), Expect = 1e-28 Identities = 164/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38432 CACCTATAAATACTGGCCCAAGAGCATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGG 38491 ||||| ||| ||||||| | | |||||||| | || || | ||||| || ||||| Sbjct 52 CACCTTCAAAGACTGGCCGCGGTGTATGAAGCAAAAACCCGAAGAATTGGCGGAAGCCGG 111 Query 38492 CTTCTACTATTCGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAA 38551 |||| ||| | ||| ||||||| | ||||| |||| |||| ||| ||||| || Sbjct 112 TTTCTTCTACACCGGCCACGGAGACAAAACGAAATGCTTCTACTGCGACGGTGGCCTGAA 171 Query 38552 GGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTCGACAGGTGCGC 38611 ||||||||| | |||| || |||| |||||||||||||||||||||||| ||||| Sbjct 172 AGACTGGGAGAACGACGACGTCCCATGGGAGCAGCACGCGCGCTGGTTCGACAGATGCGC 231 Query 38612 TTACGTGCTCACC--GTCAAAGGCGCCGACTACGTTCAA 38648 |||||| ||| | || || ||| ||||||||||||| Sbjct 232 TTACGT--TCAACTGGTAAAGGGCCGCGACTACGTTCAA 268 >seq27267 Length=86652 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||||||||| |||||||||| | ||||| |||||||| || || | Sbjct 6884 CACGGCTTCCACGTGCACGAATTCGGCGACAATACAAACGGGTGCACGTCCGCCGGCGCT 6943 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| |||| | ||| ||||| || |||| ||| ||| || ||||||||| Sbjct 6944 CACTTCAACCCCAACAAGCAGGAGCACGGTGCACCCACCGCCACCGTGCGCCACGTTGGC 7003 Query 127664 GACCTGGGCAACGTGGAGGC 127683 ||||| |||||| | ||||| Sbjct 7004 GACCTCGGCAACATCGAGGC 7023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537196839181200