Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq55175 217 1e-51 seq18898 93.3 3e-14 seq33159 91.5 1e-13 seq27463 82.4 5e-11 >seq55175 Length=171662 Score = 217 bits (240), Expect = 1e-51 Identities = 783/1202 (65%), Gaps = 41/1202 (3%) Strand=Plus/Minus Query 83551 TGTTCATCGCGTTGAGCAAATCGCCGTTGTCGGCATCGATCTCCCAAGCAAACAGGCCGC 83610 ||||||| ||||| | || ||||| ||||| |||||||||||||| || || || |||| Sbjct 40266 TGTTCATAGCGTTTAACAGTTCGCCATTGTCTGCATCGATCTCCCACGCGAATAGACCGC 40207 Query 83611 CTAGTTT---GTTTCGATCGACATATTTAACCTTTCCTAAAACAGAATCGACGCT-GTCG 83666 | ||||| ||||| || ||||| || |||||| || | |||| | | |||| Sbjct 40206 CCAGTTTATTGTTTC--TC-ACATACTTG-CCTTTCTCAATAGTCGATCGCGGATTGTCG 40151 Query 83667 TACGAAATTAAATCGCCTTTGTTTTTATTGAAAACGTATGACGCTTGAGCTGCGCTGTCA 83726 |||| |||| || || | | |||| || |||| |||| || || |||| Sbjct 40150 TACGTTATTAGGTCACCGGTCGATGGCCTGAACACATATGGGGCTTCTGCAACGTTGTCG 40091 Query 83727 -AACGTATACACATAATTG----TTG--AGTTCGTTTTGAATTTGACGATAATCTACAAC 83779 || | | || | | ||| | | | ||| ||| |||| | ||||| ||||| Sbjct 40090 TAATGGA-ACTCCCATTTGCCCATAGCAATTTCATTTGCTATTTCCCTGTAATCAACAAC 40032 Query 83780 GCCATCCTCCCACGTGCCCGGTATTGGCCCGTTGCCAGTTCCGGTAAA---ATAGTTATC 83836 ||||||| ||| || || || ||| || || | | || || || || |||| | Sbjct 40031 ACCATCCTGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAATGGATTGTTACC 39972 Query 83837 ATTCGTATAATTTGTTAGGCCGGTCCAACCGCGGCCGTACATGGCAACGCCAATAATTAT 83896 ||| || | ||| | || ||||| ||||| |||||||| || || || | | || Sbjct 39971 -TTCATA-ACCGTGT-ACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAAT 39915 Query 83897 TTTGTTGGGATCAACACCCTGTTTAAGTAGCACACTGACAGCGTGATGTGTGGTGTATAA 83956 || || || | ||||| || ||||| | ||| | || ||||| || Sbjct 39914 CTTCTTAGGGTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGGTATAAGT 39855 Query 83957 CTCTTCCGAGTTCCAACTCGGCGCGTAAATTGTGGTTTGGTAGCCCAAATCCGT-GTTTG 84015 |||| | ||||| || || || | | || || | | || | || ||| | Sbjct 39854 TTCTTTGGGATTCCATGCAGGGGCATATAGGGGAGTCTGAT-GACCGAGGGTGTCGTTGG 39796 Query 84016 ACCAAGCACCTTTAAAATCATAATTCATTAAAAATATTTTTCCTAAAGACTTTTGCGCCT 84075 |||| |||||||| || || ||| |||| | || || | | | | ||||||| || | Sbjct 39795 ACCAGGCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTT 39736 Query 84076 CGTCATAGTTTACCACGGCAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAATTCGT 84135 || || | ||| || |||||| || | || ||||||||||| || | |||| Sbjct 39735 CGCTGTAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGT 39676 Query 84136 AAACCCTGCCAGTTTGCGATTCT---AGCTCGTCTAACATTGCGCGCAGTTCCTCTAATA 84192 | | | || |||| ||| ||||||| ||||||| |||||| |||| | || Sbjct 39675 ATTTCTTACCCGTTTC---TTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTA 39619 Query 84193 TTAAAATGTATGTTTTGGCGTCACGTTCAGCATCCCCCAACGACGGG-TTGGCTCCTTTG 84251 | || || || | || ||| | | || || | |||| || ||||| || Sbjct 39618 GTTCAACATAAACTTCTCCATCT--TTCGGGCTACC--AAGGTCGGGGTTAGCTCCCTTA 39563 Query 84252 CCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTCCATACTTGTAAAAAC 84311 || || || ||||||||||||||||| ||||| ||||| || ||||| ||| | || Sbjct 39562 CCGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAA 39503 Query 84312 TCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACATTGTGCATGAAATAAAAC--- 84368 || || || |||| || || || | || || |||| ||||| | || Sbjct 39502 TCTTTCACAGAATCAACGAAGCGGTCCCGCTTC---ACTTTGTCAGTGAAAAAGAAGAAA 39446 Query 84369 GGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGCGGGTTCGCCAAT 84428 || || | | ||||| || || ||||| || || || || |||| ||| | || | Sbjct 39445 GGATCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGT 39386 Query 84429 TTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAAGCGGACACGCCC 84488 ||| | ||||| || |||||||||||||| || ||||| ||||||| |||| |||| Sbjct 39385 TTAAGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGACAAGCCC 39326 Query 84489 TTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTAAAATCCGCACGT 84548 || || |||||||| | || ||||| |||||||| |||| || || ||||| |||| Sbjct 39325 TTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGG 39266 Query 84549 CCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTGAGAGCATCGTTT 84608 || ||||| || || || |||| || ||||| || || | || | | || || Sbjct 39265 CCACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTCATTG 39206 Query 84609 ATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGATAAATTTGGCAAG 84668 || |||| || || ||||| || || ||||| ||||| | || | | ||| || | Sbjct 39205 ATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATT 39146 Query 84669 GGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAACAAAATACGCAGCA 84728 || | || || || || || || ||| || |||||||| || || || || || Sbjct 39145 GGTATACGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGCTCCA 39086 Query 84729 AC 84730 || Sbjct 39085 AC 39084 >seq18898 Length=402 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||||| ||| | || || ||||||| || || || ||| | || ||||| Sbjct 307 CAAAATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACAATCACCCTCGAGGTAGAAGC 248 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || | ||| || || || || |||||| | ||| | Sbjct 247 CTCTGACACTATCGAAAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATTCCTCCTGA 188 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||| | || || || |||||||| || || |||||| ||| | |||| || Sbjct 187 CCAGCAGCGTCTGATATTCGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGACTA 128 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| |||||||||||||| ||||| |||| ||||| | || || || Sbjct 127 CAATATCCAGAAGGAATCTACCCTTCACTTGGTGCTACGTCTTCGTGGCGG 77 >seq33159 Length=163697 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| || || || || ||||| || ||||| ||| || | Sbjct 97020 ATGCAGATTTTCGTCAAAACCTTGACTGGGAAGACCATCACATTGGAAGTTGAACCCTCC 97079 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || || ||||| || || | || | |||| Sbjct 97080 GACACAATTGAAAATGTTAAGGCGAAGATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 97139 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| |||||||| | || ||| | || || | || |||||| Sbjct 97140 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAGGATGGACGTACATTGTCAGACTACAAT 97199 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||||||||||||||| | || | |||||| |||||||| Sbjct 97200 ATCCAGAAGGAATCTACTCTTCACTTAGTCCTCCGTTTAAGAGGAGGA 97247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||||||| |||| || || || || || | || |||| | | Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| ||||||| ||||| || || | || | | || Sbjct 97307 AGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCA 97366 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTAC 22010 || | ||||||||||| || || || || |||||| | | ||| | |||| ||| Sbjct 97367 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTT--CCGACTAC 97424 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || |||||||| ||||| |||| | ||||| ||||||| Sbjct 97425 AATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 >seq27463 Length=372575 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || ||||||| | ||||| |||||||| || | || |||||| | Sbjct 145866 AATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 145807 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || |||||| || |||||||| | || | | || Sbjct 145806 TGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCA 145747 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || ||| | ||||| || |||||||| | |||||| | ||| || | || ||||| Sbjct 145746 GCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCGGACTACAA 145687 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| || | | |||||||| Sbjct 145686 CATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGG 145639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357860869856380