Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq55175 214 2e-50 seq36087 118 9e-22 seq33159 116 3e-21 seq32636 113 4e-20 seq33871 96.9 3e-15 seq16804 89.7 4e-13 >seq55175 Length=171662 Score = 214 bits (236), Expect = 2e-50 Identities = 645/976 (66%), Gaps = 40/976 (4%) Strand=Plus/Plus Query 20446 GCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTT 20505 || || || || |||||||| ||||| || || |||| || ||||| |||| || Sbjct 39090 GCTTACTTCGTGGAATGGGGTGTTTACCCACGAAAATTCCCAGTCGATCGTATACCAATT 39149 Query 20506 CCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAAC 20565 || ||| || ||||||| | ||||| ||| | |||||||| || || ||||| ||||| Sbjct 39150 CCTAATCTGACTCATCTTTTGTATGGTTTTATTCCAATTTGTGGAGGCGATGGCATCAAT 39209 Query 20566 GACGCGTTAAAGTTG-TCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGG 20624 ||| |||||| || || | |||| | |||| | || ||||| ||| || Sbjct 39210 GACAGTTTAAAGGAAATCGAAGGC----AGTTTTCAAGCTCTTCAGCGTTCATGCAGTGG 39265 Query 20625 CCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAA 20684 ||| || |||| || ||| |||| |||||||||||||| ||||| || || ||||| || Sbjct 39266 CCGTGAAGATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAGCCACAGAA 39325 Query 20685 AGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAA 20744 || | || |||||||| ||||| |||||||| || ||||||||| ||||| | || Sbjct 39326 GGGCTTGTCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGATGTCCCTTAA 39385 Query 20745 ACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCC 20804 || || || | |||||| | |||||||| || || || |||||| | | ||||| Sbjct 39386 ACAAGCTAGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTTGCTGATCC 39445 Query 20805 GTTTTATCATATGCACGATCCGATCGTA-CGCCAAGTTTTCATCGATTCTGTGGAAGAGT 20863 ||| || | | ||| | | | | || | ||| | ||||||||| |||| | Sbjct 39446 -TTTCTTCTTTTTCACTGACAAAGTGAAGCGGGACCGCTTCGTTGATTCTGTGAAAGATT 39504 Query 20864 TTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGCA 20923 | | || ||||| ||||| || || |||||||| || ||||| || || || || | Sbjct 39505 TCCTTCAAACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGCGGTA 39564 Query 20924 AAGGTGCGAATCCGAACGTGGGCGATCCCGAACGCGATCGAGAAACGTATACGCTTTTAC 20983 | || || || || || | || | |||||| ||| ||||| || || | || || Sbjct 39565 AGGGAGCTAACCCCGACCTTGG-TAGCCCGAA--AGATGGAGAA--GTTTATG-TTGAAC 39618 Query 20984 T--TCAA-GAGCTTCGTTTGCGA----TTGGACGCACTCGGCGTCAAAAC---TAACAGA 21033 | | || ||| | | |||| || ||| || || |||| ||| | Sbjct 39619 TAATGAAGGAGTTGC----GCGAAATGTTAAACGAGCTTTCCGAAGAAACGGGTAAGA-- 39672 Query 21034 TACTACGCCCTAACTTCAGCTGTAAGTGCGGGTAACGACAAGATCGCCGTAGTAAATTAC 21093 | |||| || || |||||| | ||||| || || ||||| || ||| ||||| Sbjct 39673 -AATACGAGCTCACCTCAGCTATTAGTGCTGGATGGGATAAGATTCAAGTCGTAGATTAC 39731 Query 21094 ACCGAAGCGCAAAAGTACTTGGATGTAATATTTTTAATGACGTACGACTTTAAAGGCTCA 21153 | |||||| |||||||| |||| || || | |||| |||||||| ||||| | Sbjct 39732 AGCGAAGCCCAAAAGTATATGGACCACATCTTCCTCATGAGTTACGACTTCAAAGGTGCC 39791 Query 21154 TGGAGCAACACGGAACTCGGACATCACACCGCTTTGTTTGCGCCAACTTGGCGTCCCGAC 21213 ||| |||| ||||| ||||| || | | | ||| || | ||| |||| | Sbjct 39792 TGGTCCAACGACACCCTCGGTCATCAGACTCCCCTATATGCCCCTGCATGGAATCCCAAA 39851 Query 21214 GAACCCTATTGTGCCGACCGCGCCGTAGAACTAAT--GTTGAATCAAAACGTGCCCGCCG 21271 ||| | ||| | || | || || || | ||| |||| ||| | | Sbjct 39852 GAAACTTATACCACTGATTTTGGTGT-TAAATATTTACTTG-CTCAAGGTGTGAACCCTA 39909 Query 21272 GCAAGATAGCGCTAGGTGTGGCCATGTACGGCCGCGGTTGGACAGGTGTGGTCAGCGACA 21331 ||||| | | ||||||| || |||||||| ||||| ||||| ||||| || || Sbjct 39910 AGAAGATTGTGGTAGGTGTAGCTATGTACGGACGCGGCTGGACTGGTGT--ACA-CGGTT 39966 Query 21332 ATGACG---ACAATCCATTTTTGGGCGTCGCTACCGGCCCCGTGCCTGGCACGTGGGAAG 21388 |||| | |||||||||| ||| ||| || || || || || || ||| | | Sbjct 39967 ATGAAGGTAACAATCCATTCACTGGCAACGCCACAGGACCAGTAAAAGGTACATGGCAGG 40026 Query 21389 CGGGTGTTGTAGATTA 21404 |||||||| ||||| Sbjct 40027 ATGGTGTTGTTGATTA 40042 >seq36087 Length=321 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || ||||||||||||||||| | || || || || || || ||||| || Sbjct 228 ATACCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCA 169 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||| || || |||||||||||| ||||||| ||||| ||||| || Sbjct 168 GAGAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGG 109 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| || || || | | ||||| ||||| | | || Sbjct 108 GGGATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCC 49 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || |||| || | || ||||| || || ||||| ||||| |||||| Sbjct 48 ACTTCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq33159 Length=163697 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||||||||| ||||| ||| | || ||| |||||| || || ||||| Sbjct 97444 GTAGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCGAGCTGCTTACCC 97385 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| ||||| || || || || ||||||||||| || || ||| ||||| ||| Sbjct 97384 GCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAAT-TTTTGCTTT 97326 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | |||| |||||| | | ||| || || | || | || || || || || || Sbjct 97325 AACATTCTCAATGGTGTCTGATGGTTCCACCTCTAATGTGATAGTCTTCCCTGTTAGTGT 97266 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| |||||||||||||| Sbjct 97265 TTTAACAAAAATCTGCAT 97248 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | || || || | ||||| || || || |||||||| || Sbjct 97021 ATACCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 96962 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || || ||||| || ||| |||| | | ||| ||||| || Sbjct 96961 GAGAGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGG 96902 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| ||| | | ||||| ||||| | | || Sbjct 96901 GGAATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCC 96842 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||||| || || |||||||||||||| Sbjct 96841 ACCTCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 96792 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || ||||| | ||||| || || || |||||||| || Sbjct 98159 ACCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 98100 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || || ||| |||| | | ||| ||||| || || Sbjct 98099 GAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 98040 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||| ||||| || || ||| | | |||| |||||| | || ||||| Sbjct 98039 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGAC 97980 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||||| || |||| |||||||| || |||||||| Sbjct 97979 TTCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | |||||||| || || || ||||| || || ||||| ||| || Sbjct 97228 ACTAAGTGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGACAATGTACGTCCATCCTCC 97169 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||||| || || |||| | | ||| ||||| || ||||||||||| || || Sbjct 97168 AACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGG 97109 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | ||||| ||||||| || ||| || |||| || | || || Sbjct 97108 ATCTTCGCCTTAACATTTTCAATTGTGTCGGAGGGTTCAACTTCCAATGTGATGGTCTTC 97049 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||||| || ||||||||||| Sbjct 97048 CCAGTCAAGGTTTTGACGAAAATCTGCAT 97020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | ||||| || || || |||||||| || Sbjct 97933 ATACCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCT 97874 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || ||| |||| | | ||| ||||| || Sbjct 97873 GAGAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGG 97814 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| ||| ||| | ||| | | ||||| || || | | || Sbjct 97813 GGAATACCCTCCTTGTCTTGAAT-TTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTC 97755 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || ||||| ||||||||||| |||||||| Sbjct 97754 AACTTCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 >seq32636 Length=346 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || || || || || ||||| || ||| Sbjct 325 ATTCCACCACGGAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCG 266 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| |||||||| |||||| |||| |||||||| ||||| ||| Sbjct 265 GACAGGGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGA 206 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| |||| | |||| |||||| | | || Sbjct 205 GGAATGCCTTCCTTGTCCTGGATCTTCGCCTTTACATTCTCAATGGTGTCCGAAGGCTCC 146 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 145 ACTTCCAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAGATTTGCAT 96 >seq33871 Length=3159 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || || || | ||||| || || || |||||||| || Sbjct 2898 ACCGCCACGAAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 2957 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || || ||| |||| | | ||| ||||| || || Sbjct 2958 GAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 3017 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||| ||||| || || ||| | | |||| |||||| | | ||| || Sbjct 3018 AATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATGGTGTCTGAAGGTTCCAC 3077 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | |||||||| || || ||||| || || |||||||| Sbjct 3078 TTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTAACGAAGATCTGCAT 3125 >seq16804 Length=240 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || || |||||||||||| ||||||| ||||||||||| || ||||| || || ||||| Sbjct 238 TCCAGCTGTTTACCAGCGAAGATGAGTCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 179 Query 114291 GCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||||| || | | ||||| ||| || | | || || |||| || | || Sbjct 178 TGGATCTTAGCCTTCACATTTTCAATGGTATCAGATGGCTCTACTTCCAAAGTGATGGTC 119 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| || ||||| |||||||| Sbjct 118 TTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419824770137640