Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1246 102 6e-17 seq33567 96.9 3e-15 >seq1246 Length=356881 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 108463 CAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACAC 108522 || ||||||| ||| || | ||||||||||||||| |||||| |||||||| ||| Sbjct 54377 CAATGGGTGCGCGACCATCGCGTTCACCACAAGTACAGCGACACGGACGCCGACCCCCAC 54436 Query 108523 AACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGA 108571 ||||||||||| || || | ||||||||| | || ||||||||||||| Sbjct 54437 AACGCCAACAGAGGCTTGTTCTTCTCGCACATAGGCTGGCTCATGATGA 54485 >seq33567 Length=234381 Score = 96.9 bits (106), Expect = 3e-15 Identities = 96/124 (77%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 |||| | || | |||||| || ||| || | |||||||||||||| ||||| | || Sbjct 211743 CACCTGCACGAACTGGGTGAGAGACCACCGGATGCACCACAAGTACTCCGACACCAACGC 211684 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||||||||||||||||| || |||| || || ||||| || |||| ||||||| Sbjct 211683 GGACCCACACAACGCCAACAGAGGCTTCTTCTTTTCCCACGTCGGCTGGC---TGATGAC 211627 Query 108573 CAAG 108576 |||| Sbjct 211626 CAAG 211623 Score = 87.8 bits (96), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 |||| | || | |||||| || ||| || | |||||||||||||| || || | || Sbjct 222960 CACCTGCACGAACTGGGTGAGAGACCACCGGATGCACCACAAGTACTCCGATACCAACGC 222901 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||||||||||||||||| || |||| || || ||| | || |||| ||||||| Sbjct 222900 GGACCCACACAACGCCAACAGAGGCTTCTTCTTTTCCCACATCGGCTGGC---TGATGAC 222844 Query 108573 CAAG 108576 |||| Sbjct 222843 CAAG 222840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381491441797680