Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq55175 172 5e-38 seq36087 104 2e-17 seq33159 102 8e-17 seq26923 100 3e-16 seq32636 95.1 1e-14 seq27463 84.2 2e-11 >seq55175 Length=171662 Score = 172 bits (190), Expect = 5e-38 Identities = 436/651 (67%), Gaps = 23/651 (4%) Strand=Plus/Plus Query 27858 TGAAGCTGTGCAACGTCGACGGCTGTTCGACAAGT-AGCGCGGTCAAAGTGATCGTCGCC 27916 |||| |||||||| | ||||| || ||||| ||| ||| | | ||| | |||| || Sbjct 38942 TGAA-CTGTGCAATGCTGACGGATGCTCGACGAGTGAGCTCACTGAAATCG-TCGTAGCT 38999 Query 27917 GACACCGACGGTTCTCATCTCGCGCCGCTA--GTATACGATTTCCTCGAAAACAACAAGC 27974 || |||||||| |||||| | || || |||||| || ||||| | |||| Sbjct 39000 GATACCGACGGCAGTCATCTACCTCCATTAATGTATACCCTTGGAGAGAAAA--ATAAGC 39057 Query 27975 GCTTTGATAAACATCC--CGAGAAAA-TTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGT 28031 ||| ||||| | || | ||| |||| | || || ||||| || ||||| || | Sbjct 39058 CATTT---AAACAGACTTCGGGCAAAGTTGTTGGAGCTTACTTCGTGGAATGGGGTGTTT 39114 Query 28032 ATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACG 28091 | | || | || || ||||| | || || || ||| | || | |||| | Sbjct 39115 ACCCACGAAAATTCCCAGTCGATCGTATACCAATTCCTAATCTGACTCATCTTTTGTATG 39174 Query 28092 GTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGACCGTTCCCGGCA 28151 |||| | || || || || ||||| ||||| || ||| | ||| | |||| Sbjct 39175 GTTTTATTCCAATTTGTGGAGGCGATGGCATCAATGACAGTTTAAAGGAAATCGAAGGCA 39234 Query 28152 GTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACG 28211 |||| | || || ||||| || ||| || || | || |||||||| | || |||| Sbjct 39235 GTTTTCAAGCTCTTCAGCGTTCATGCAGTGGCCGTGAAGATTTCAAGGTTTCCATTCACG 39294 Query 28212 ATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACA 28271 |||| ||||| || |||| ||||| || |||||| | ||| | ||||| || || |||| Sbjct 39295 ATCCTTGGGCTGCTCTTCAAAAGCCACAGAAGGGCTTGTCTTCTTGGAATGAACCTTACA 39354 Query 28272 AAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACTTGAAGGTGCTGG 28331 ||||||| ||||| || ||||| | | ||| ||| | ||| || | || | || Sbjct 39355 AAGGCAATTTTGGTCAGCTGATGTCCCTTAAACAAGCTAGGCCGGACCTTAAAATCCTAC 39414 Query 28332 CGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC-----TTTCACATGCACGACGCGAC 28386 | || || || |||||||| || | || || ||| |||||| || || | | || Sbjct 39415 CTTCCATTGGGGGCTGGACTCTTGCTGATCCTTTCTTCTTTTTCAC-TG-ACAAAGTGA- 39471 Query 28387 CGTGCGCCAAACGTTCATCGATTCCGTCGTGGACTTTCTGCTGACCTGGAAGTTCTTCGA 28446 ||| | ||| | ||||| || || || || | ||||||||||||||||| Sbjct 39472 --AGCGGGACCGCTTCGTTGATTCTGTGAAAGATTTCCTTCAAACCTGGAAGTTCTTCGA 39529 Query 28447 CGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCCCGA 28497 || || |||||||||||||| || || ||||| || ||||| || ||||| Sbjct 39530 TGGTGTTGACATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAACCCCGA 39580 >seq36087 Length=321 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| | |||||||||||| | | |||||||| || || |||||||| Sbjct 225 CCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 166 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| |||||||| | |||| || ||||| ||||| || || Sbjct 165 AGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 106 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | ||| | ||||| | | |||||| Sbjct 105 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACT 46 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGC 138612 || | ||| | || || || || || ||||| ||||| |||||| Sbjct 45 TCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq33159 Length=163697 Score = 102 bits (112), Expect = 8e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | || || || | | || || |||||||| ||||||||| Sbjct 97475 GCCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGG- 97417 Query 138447 CATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | ||| |||| || ||||| || ||||| | | |||| ||||| || || || || Sbjct 97416 -AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGG 97358 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTC 138563 || || ||||| || || ||| |||||| ||||| | || | |||||| | | || Sbjct 97357 GGAATGCCTTCCTTATCT-TGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTC 97299 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| | || | || || || || || ||||| |||||||||||||| Sbjct 97298 CACCTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || ||||| | | | |||||||| || ||||||||||| Sbjct 98158 CCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 98099 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| |||| | | ||| ||||| || || Sbjct 98098 AGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 98039 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| ||| | | || | |||||| | | ||| || Sbjct 98038 ATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACT 97979 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| |||||||| || |||||||| Sbjct 97978 TCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || ||||||||||| | Sbjct 97930 CCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC--TG 97873 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| ||| || || || || || |||| |||| | | ||| ||||| || | Sbjct 97872 AGAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 97813 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCC 138564 | ||||| || ||||| ||| |||| | |||| | ||| | || || | | ||| Sbjct 97812 GAATACCCTCCTTGTCT-TGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCA 97754 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | |||||||||||||| ||||||||||| |||||||| Sbjct 97753 ACTTCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 >seq26923 Length=415599 Score = 100 bits (110), Expect = 3e-16 Identities = 141/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 124669 GAGGAACGTCTTATGAGTTTCGCCGAATGGCCGGCGTCGAATCACGTGTCGCCGCAGCAG 124728 ||||| || || | || |||| | | ||||| ||| || | | ||||||| | ||| Sbjct 192513 GAGGAGCGGCTCAAGACGTTCGACAAGTGGCC--CGTGGACTTCC-TGTCGCCCGAACAG 192569 Query 124729 CTCGCGTCCGCCGGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGC 124788 |||||| | ||||||||| ||| | ||| ||||||||||| |||||||| || || Sbjct 192570 CTCGCGCGCAACGGCTTCTATTACCTCGGCCGTGGCGACGAAGTTCGTTGCGCCTTTTGT 192629 Query 124789 AAAGTCGAAATTATGCGATGGCAGCCCGGCGACGATCC-GCTAACGGACCACAAACGATG 124847 ||||||||||| ||||| ||| |||||||| || || || |||||| | || || Sbjct 192630 AAAGTCGAAATCATGCGCTGGGTCGAGGGCGACGACCCTGCGAA-AGACCACCAGCGTTG 192688 Query 124848 GGCGCCTCAGTGT 124860 ||| || || ||| Sbjct 192689 GGCCCCACAATGT 192701 >seq32636 Length=346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | |||||||| || ||||| |||||| | Sbjct 322 CCACCACGGAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 263 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| || | |||| |||||||| ||||| ||||| Sbjct 262 AGGGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGA 203 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || |||| | || | |||||| | | |||||| Sbjct 202 ATGCCTTCCTTGTCCTGGATCTTCGCCTTTACATTCTCAATGGTGTCCGAAGGCTCCACT 143 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||| || || || || || || ||||| Sbjct 142 TCCAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAGATTTGCAT 96 >seq27463 Length=372575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | | |||||| || || | |||| ||||| || ||||||||||| | Sbjct 145639 CCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 145698 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||||| |||| |||| | | || || || || || Sbjct 145699 AAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 145758 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | ||||| | ||| | ||||| | | || || Sbjct 145759 ATGCCCTCTTTGTC-TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 145817 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | |||||||| || || ||||| || || |||||||| Sbjct 145818 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 145865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495887287658400