Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq55175 132 5e-26 seq36087 122 8e-23 seq33159 122 8e-23 seq21507 104 2e-17 seq18898 104 2e-17 seq27267 100 3e-16 seq16804 86.0 6e-12 >seq55175 Length=171662 Score = 132 bits (146), Expect = 5e-26 Identities = 218/309 (71%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 22502 GATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTG 22561 ||||||||||| |||| |||||||| ||||| || | ||||| || || || ||| || Sbjct 39273 GATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAGCCACAGAAGGGCTTG 39332 Query 22562 TCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCG 22621 || || ||||| ||||| ||||||||||| |||||||| ||||| | | ||| ||| Sbjct 39333 TCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGATGTCCCTTAAACAAGCT 39392 Query 22622 AATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTAT 22681 | || | || ||| | || | || || || || ||||| | | ||||| ||| | Sbjct 39393 AGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTTGCTGATCC-TTTCTT 39451 Query 22682 CATATGCAC-GACAA---GAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTT 22737 | | | ||| ||||| ||| | | ||| ||| | ||||| ||| |||| | | Sbjct 39452 CTTTTTCACTGACAAAGTGAA-GCGGGAC--CGCTTCGTTGATTCTGTGAAAGATTTCCT 39508 Query 22738 GATCACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGG 22797 || ||||||||||| || || || || || |||||||| || || ||||| ||||| Sbjct 39509 TCAAACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGCGGTAAGGG 39568 Query 22798 GGCGAATCC 22806 || || || Sbjct 39569 AGCTAACCC 39577 >seq36087 Length=321 Score = 122 bits (134), Expect = 8e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || ||| || ||||| | || ||||| || || |||||||| || Sbjct 225 CCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 166 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| |||||| |||| | ||||||||| || || || Sbjct 165 AGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 106 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| ||| | | ||| | ||||| | ||| ||| Sbjct 105 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACT 46 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 || | || | || ||||| || || ||||| ||||| |||||| Sbjct 45 TCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq33159 Length=163697 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| || | |||||| || | |||||||| || || || ||||| || Sbjct 97018 CCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 96959 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || |||||||| || ||| ||||||| | |||||| || || || Sbjct 96958 AGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 96899 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || || | | ||| | ||||||| | ||| || Sbjct 96898 ATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 96839 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||||| || || |||||||||||||| Sbjct 96838 TCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 96792 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | |||||||| || || || ||||| || Sbjct 97930 CCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 97871 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||||||| || || ||| ||||||| | |||||| || || || Sbjct 97870 AGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 97811 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||||| ||| | | ||| | || || | | ||| ||| Sbjct 97810 ATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACT 97751 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || ||||| ||||||||||| |||||||| Sbjct 97750 TCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | |||||| || | ||||| ||||||||||||||||| ||| | |||||| Sbjct 97465 AAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGA 97406 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || || || |||| | || |||||||| || || ||||| ||| Sbjct 97405 CCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCC 97346 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 || | | ||| ||| ||| || | | || | |||||| | || || || | || Sbjct 97345 TTAT-CTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCACCTCTAATGT 97287 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || || ||||| |||||||||||||| Sbjct 97286 GATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 >seq21507 Length=372 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| |||| | ||||| || | ||||||||||| || |||||||| || Sbjct 251 GCGCCACCGCGCAATCTGAGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCT 192 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || ||||||||||| || || |||| || | |||||||| || Sbjct 191 GAGAGTGTGCGGCCGTCTTCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGG 132 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||||| |||||| || | | ||||| ||| || | ||| Sbjct 131 GGGATTCCCTCCTTGTCTTGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCA 72 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || ||||| || || || || || ||||||||||| Sbjct 71 ACCTCTAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22 >seq18898 Length=402 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||||| || || || |||||||| ||| | |||||| ||| || Sbjct 94 CACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCATCTTC 153 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| | |||| |||||||| || ||||| || ||||||||||| Sbjct 154 CAGCTGCTTGCCAGCGAATATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTG 213 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | ||||| ||||| | || || |||| ||| | || || Sbjct 214 GATCTTAGCCTTCACATTTTCGATAGTGTCAGAGGCTTCTACCTCGAGGGTGATTGTCTT 273 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || |||||||| ||||| Sbjct 274 TCCCGTTAGGGTCTTCACAAAAATTTGCAT 303 >seq27267 Length=86652 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTG 50713 || || |||||||| || ||||| |||||||| || |||| |||| || ||||| | Sbjct 7023 GCCTCGATGTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTCC 6964 Query 50714 CGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 50773 | || || ||||| ||||||| |||||||| ||||| | ||||||||||| Sbjct 6963 TGCTTGTTGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAAT 6904 Query 50774 TCGTGCACGTGGAACCCGTGAAAGCCCT 50801 |||||||||||||| ||||| ||||| Sbjct 6903 TCGTGCACGTGGAAGCCGTGTTTGCCCT 6876 >seq16804 Length=240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || |||||||| |||||| |||| | |||||| || || || || || |||||||||||| Sbjct 238 TCCAGCTGTTTACCAGCGAAGATGAGTCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 179 Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 ||| || ||| | | ||| | ||| || | ||| ||||| | || | || Sbjct 178 TGGATCTTAGCCTTCACATTTTCAATGGTATCAGATGGCTCTACTTCCAAAGTGATGGTC 119 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| || ||||| |||||||| Sbjct 118 TTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475141380832800