Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq55175 210 2e-49 seq27463 96.9 2e-15 seq33159 86.0 4e-12 >seq55175 Length=171662 Score = 210 bits (232), Expect = 2e-49 Identities = 776/1205 (64%), Gaps = 38/1205 (3%) Strand=Plus/Minus Query 5830 TGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCAAATAAACCAC 5889 ||||||| || ||||| || || || ||||| || || || |||||||| |||| ||| | Sbjct 40266 TGTTCATAGCGTTTAACAGTTCGCCATTGTCTGCATCGATCTCCCACGCGAATAGACCGC 40207 Query 5890 CCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATCGTTGTCGTACG 5949 ||| || ||| | |||||||| ||||| | | |||| | |||||||||| Sbjct 40206 CCAGTTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGCGGATTGTCGTACG 40147 Query 5950 TAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCAATGTTATCATAGA 6003 | | || ||| | || | | || || || | || ||||| ||| || || Sbjct 40146 TTATTAGGTCACCGGTCGATGGCCTGAACACATATGGGGCTTCTGCAACGTTGTCGTA-- 40089 Query 6004 ATTGTACAC---TTTCGTCGTACCTATTTA-----CAATATCTTTATAATCGATTACGCC 6055 || | || | ||| | || | |||| | || || | ||||| | || || Sbjct 40088 ATGGAACTCCCATTTGCCCATAGCAATTTCATTTGCTATTTCCCTGTAATCAACAACACC 40029 Query 6056 GCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGATTATTGTTTTC 6115 | |||||||||||| || || | | || | || || || ||||| || ||| Sbjct 40028 ATCCTGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAATGGATTGTTACCTTC 39969 Query 6116 GACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACTACTAATTTAGT 6175 | || ||||| ||||||||||||| |||||||| |||||||| || | || | Sbjct 39968 ATAACCGTGTACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTTCTT 39909 Query 6176 CGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGTGTAATTTTCGTT 6235 | | ||| |||| | || |||| | |||||| || || ||| |||| || Sbjct 39908 AGGGTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGGTATAAGTTTCTTT 39849 Query 6236 AACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTCCATGGACCAAGC 6295 | ||| | ||| || || || || || ||| ||| | | || ||||||| || Sbjct 39848 GGGATTCCATGCAGGGGCATATAGGGGAGTCTGATGACCGAGGGTGTCGTTGGACCAGGC 39789 Query 6296 GCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTGCGCGTCTGTATA 6355 ||||| || ||||| |||| | || || | || | ||| ||| || || | || Sbjct 39788 ACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTA 39729 Query 6356 ATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAGTTGCAATCGTTT 6415 ||| || || | || || || | || |||| ||||| || || | || || Sbjct 39728 ATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTT 39669 Query 6416 ACCTCTCtttttttCCAAT---TTGTTGAGCATTTCGCGTAACTCCTTTAAAAGTATTGT 6472 ||| | ||| ||| | | ||| | ||||||||| |||||||| | ||| Sbjct 39668 ACC---CGTTTCTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGTTCAAC 39612 Query 6473 ATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCTTTACCGCCCGG 6532 ||| || | ||| | | | | || || ||||| || || |||||||| || Sbjct 39611 ATAAACTTCTCCATC---TTTCGGGCTACCAAGGTCGGGGTTAGCTCCCTTACCGCCAGG 39555 Query 6533 AAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAAAATTCGCGCAC 6592 || |||||||| ||||| || || ||||| || ||||| |||| | || || ||| Sbjct 39554 GAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCAC 39495 Query 6593 ACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAAACGGATCGCTAAG 6652 | |||||| || | || || | ||| | || | | || ||||| ||| Sbjct 39494 AGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGAAGAAAGGATCAGCAAG 39435 Query 6653 CGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGCGCTTGATCGCCAT 6712 ||||| || || || || || | ||| | | || || | | || | | ||| Sbjct 39434 AGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGACAT 39375 Query 6713 TAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACA--CCTTTTTGTGGT 6770 | ||| ||||| || |||||||| ||||| || | | |||| || || ||||| Sbjct 39374 CAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAA--GACAAGCCCTTCTGTGGC 39317 Query 6771 TTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTCGGCCGGCGCAC 6830 |||||||| || |||| ||| ||||||| || |||||||||| ||||| ||| Sbjct 39316 TTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTGCAT 39257 Query 6831 GATTTTTGCAACGCCTCAAACGAACTGGGT---ATTTGTTGTTTAAGCGCATCGTTTACA 6887 || || | || | ||| |||| | |||| | |||| | || || | Sbjct 39256 GAACGCTGAAGAGCTTGAAA---ACTGCCTTCGATTTCCT--TTAAACTG-TCATTGATG 39203 Query 6888 CCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTAGGAATGGGA 6947 |||||||| ||||||||||| ||||| || ||||| | ||| || ||||||||||| || Sbjct 39202 CCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATTGGT 39143 Query 6948 ATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAAGCGCCCACA 7007 || ||| | || ||| || |||||||||||||||||| |||||||| || ||| Sbjct 39142 ATACGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGCTCCAACA 39083 Query 7008 ACATT 7012 || || Sbjct 39082 ACTTT 39078 >seq27463 Length=372575 Score = 96.9 bits (106), Expect = 2e-15 Identities = 167/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 39485 AATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATT 39542 || ||| || ||||| | | || ||||| || ||||| | ||| || || || || Sbjct 145631 AAACATTACCTCCTCGAAGCCTCAAAACCAAGTG--AAGTGTTGATTCCTTCTGGATGTT 145688 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 || || | |||| |||| |||| ||||| ||||| ||| | || || || | ||||| Sbjct 145689 GTAGTCCGACAAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTG 145748 Query 39603 ATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCT 39660 ||| | || | ||| |||||||| ||||| ||| | | ||| || ||||| Sbjct 145749 ATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATA--GTGTCA 145806 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | | ||| || || || || || ||||||||||| | ||||| |||||||||||||| Sbjct 145807 GAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 145865 >seq33159 Length=163697 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || |||||||| | || || || || || || || || | Sbjct 98158 CCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 98099 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| || | || || ||| | || || || | |||||| || | ||| Sbjct 98098 AGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 98039 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | || | | ||||| | | || || Sbjct 98038 ATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACT 97979 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || |||||||| || || |||||||||||||||||||| Sbjct 97978 TCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347113596203510