Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq34861 526 2e-144 seq39759 134 2e-26 seq22323 100 3e-16 >seq34861 Length=230841 Score = 526 bits (582), Expect = 2e-144 Identities = 1190/1789 (67%), Gaps = 32/1789 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || || |||| ||||| |||| || | |||| | || || |||||||| || Sbjct 60371 TTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAATACATTCC 60430 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | ||| | ||||| |||| || || || || || || |||| | || Sbjct 60431 CGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCATAATTCGG 60490 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | |||||| |||| ||||||||| ||||| |||||||||||||| ||||| || Sbjct 60491 TTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTGTCAGCAGC 60550 Query 47153 CATATCTAAAATAACCCTTTGT--GGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | || | ||| | || ||||| || |||||||| | |||| |||| Sbjct 60551 CATTTT--AATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGTCTAATA 60608 Query 47211 TCTTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 || | ||| | | | | ||||||||||||| || ||| | || || | || || Sbjct 60609 TCCTTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTATCTGATTCTTC 60668 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 | || | ||| || | | | || || | || | |||| | || |||| | Sbjct 60669 ATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTTACAACT 60728 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTAT---ATATATTACTTGTATATGGTTCTATA 47384 |||||||||||||||| || ||| || | | || || |||| ||||||| | Sbjct 60729 TGAAATTCTCCAGATAAAAC---ACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAT 60785 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 |||||||||||||| || ||||| || || ||||| || ||||| | || | ||| | Sbjct 60786 GATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAAAGT 60845 Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||| | | ||||||||| || | |||| ||||| ||||| Sbjct 60846 GAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCACAGATCA 60905 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 | |||| || ||| | ||||||||| | || || | ||| |||| || | | Sbjct 60906 GTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACTTCCTTCA 60965 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 || || ||||| || | | || |||||||| ||||| ||||| ||||| | || Sbjct 60966 TAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCCGTAG 61025 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 |||||||||||||| |||| | ||| || || |||| ||| |||| | ||| Sbjct 61026 TATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGGAATG 61085 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 |||||||| || || ||||| || |||||||| || ||||| || Sbjct 61086 CGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTGTCGC 61145 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 | |||||| || |||||||| | ||| || | ||| | ||| || |||||||||||| Sbjct 61146 ATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTTATTTAGA 61205 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA-- 47862 | |||| | ||||| |||||| | | | |||| | Sbjct 61206 TTCTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATGTTTTATCTTCA 61265 Query 47863 -TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 ||||||| ||||| | || || || || | ||||| || || || |||| || | Sbjct 61266 TTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATCTGCTGAA 61325 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 ||||||| | ||||||| ||| | ||||| ||||| || || || | ||||| ||| Sbjct 61326 GTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGA 61385 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 ||| | | ||||||| || ||||| ||||| | ||||| || ||||| | || Sbjct 61386 TTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCGACTTGT 61445 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCT--AGCCTTTATAACA-GCTCTAGCTT---TA 48095 | || || || | ||||| |||| || ||| | ||| ||| || | | Sbjct 61446 GCCTCTATTATTGCCTTCCA--CAGTTCTTGAGC---TCGAACTTGCT-TAACGAACCTC 61499 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC 48155 || || ||||||||||| |||||| | |||||||| || || | ||| | || Sbjct 61500 TTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCA-ACAGTCGGCAAG 61558 Query 48156 -CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 ||||| || || | ||| ||||| || ||| ||||| |||| || | |||| Sbjct 61559 ACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGGTTCAT 61618 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 ||||| ||| || ||||| | ||| |||||| || || | ||||| ||||| || || Sbjct 61619 AAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTCTTTACC 61678 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 | ||||| |||| || || | ||| || | | ||||| |||||| |||||||| || || Sbjct 61679 AGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAAGTAAAT 61738 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 ||| | | |||||||||||||| |||||||| || | ||| || || ||||| || || Sbjct 61739 TGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATTATTGTA 61798 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 ||||| |||||||| |||| |||||| || | || || || || | || || | || Sbjct 61799 CACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTAGGTACC 61858 Query 48455 ACTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | | ||| ||| | || || | | || |||||||| || ||| || |||| | Sbjct 61859 TTTTGATCTGATACAATGAACATGTACT-CCAATACCACCAGCTGATTTGGAAATTAATG 61917 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 |||| |||| | || ||||| || ||||| || ||||||||| |||| || || | Sbjct 61918 CACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTATGAGGA 61977 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | ||| ||| | |||||| |||| ||| | || ||||| ||| ||||||| Sbjct 61978 AGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTGCATGAG 62037 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 | || |||| || || ||||| || || ||||| || | | ||| || || || Sbjct 62038 TGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTTCACCAT 62097 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 | || || ||||| || ||||||| ||||| || ||||||||| |||| Sbjct 62098 GGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAAT 62146 >seq39759 Length=128263 Score = 134 bits (148), Expect = 2e-26 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||| | ||| |||| || |||||| ||||| || | ||| || ||||| || || || Sbjct 66885 ATAAGTATCAATCAGCAATGAGTACATCTCTGAGTGTACATTCTCCATAGCAATTTGGAA 66826 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 ||| ||||| | |||||||| || || ||||| |||||| ||| ||||| || Sbjct 66825 TCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAGTT 66766 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409 |||||||||||| |||||| ||| ||||||||||| ||||||||||||||||| || Sbjct 66765 TTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAAGTG 66709 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| || | ||||| || || | ||| ||||||| || | || | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||||||||| || ||||| ||| |||||||| || |||||||| |||||||| | Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| | ||| ||| | | ||| ||| | |||||||| ||||||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| || ||||||||||| | || || || | ||| |||| Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAATA 67113 >seq22323 Length=191951 Score = 100 bits (110), Expect = 3e-16 Identities = 231/345 (67%), Gaps = 5/345 (1%) Strand=Plus/Minus Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708 ||||||||||| ||| | ||| |||| || || | || | || || | ||| ||||| Sbjct 187090 CCAATGTTGGCTGAAGCTTGTAAATCAGTTGAAATGGCTATGAAGAAATGTCCGAATGGC 187031 Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768 || || | |||||||||||||| || ||||| || || ||||| || || || | Sbjct 187030 ATGTTCTCTGAAATAAAATATGATGGTGAACGGGTGCAAGTTCATAAAAAAGGTTCAGAA 186971 Query 136769 TTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTAAT 136828 ||| || ||| | || | | || || || | || ||||| || || |||| Sbjct 186970 TTTAAATACTTTTCTCGAGCCTTAAAGCCAGTTATGGCCCACAAAGTCAATCATTTTAAG 186911 Query 136829 GAGTATATACCTAAAGCCTTTAAAAATGTA-TCATCTCTTATTTTAGATTCAGAAATAGT 136887 |||||| |||||||||| || || | | | || | || ||||| |||| | | Sbjct 186910 GAGTATCTACCTAAAGCATTCCCTAAGGGAGTTGACT-TAATATTAGACACAGAGGTTTT 186852 Query 136888 ACTAGTAGATAAAAATA---ATAAACCATTACCATTTGGCAGTTTGGGTATACATAAAAA 136944 | | || ||| |||| ||||| ||||||||||| | ||||||||||||||| | Sbjct 186851 ATTGGTGGATGTGAATACAGGGAAACCTTTACCATTTGGTACATTGGGTATACATAAACA 186792 Query 136945 GAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTG 136989 | | || || ||| | | | ||| | | ||| |||||||| Sbjct 186791 GTCTGCATTCAAAGATGCTGAAGTTTGTCTTTATGTGTTTGATTG 186747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561683916010800