Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq28233 277 1e-68 seq51825 158 1e-32 seq24811 156 3e-32 seq33159 114 1e-19 seq46927 113 4e-19 seq27463 89.7 4e-12 seq33871 87.8 1e-11 >seq28233 Length=840962 Score = 277 bits (306), Expect = 1e-68 Identities = 393/550 (71%), Gaps = 2/550 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||||||||| ||||| |||||| |||||| || | |||||| ||||||| Sbjct 331528 GCTGTTGGTATAGATTTGGGAACAACATATTCTTGTGTGGGCGCGTGGCAACATGGTAAT 331469 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| || || |||||||| ||| ||||||| || || |||||| | ||||| Sbjct 331468 GTAGATATTATCGCAAACGATCAAGGAAACCGAACTACGCCGTCATATGTTGCGTTCACT 331409 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || |||| |||||||| ||| | || | || ||||||| |||| Sbjct 331408 GACACCGAACGATTGATTGGAGATGCAGCCAAAAACCAGGTAGCTCTGAATCCTAACAAT 331349 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 |||||||| ||||| || || ||||||||| ||| | | | ||| | | ||| || | Sbjct 331348 ACTATTTTCGATGCCAAGCGATTAATTGGACGAAAGTATGACGATCCTAATGTACAACAA 331289 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || || || |||||||| || || | |||||| | || |||||| | || | | Sbjct 331288 GACATTAAACATTGGCCATTTAAAGTCATTAATGATAACGGTAAACCTAAAATACAGGTA 331229 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 || | ||||| | ||| ||| | ||||| |||| |||||| | | Sbjct 331228 ACATTTAAAGGAAAAGCAAAAGTATTCACTCCAGAGGAAATAAGCAGTATGGTGCTTTTA 331169 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAAC 550410 |||||||| | | ||| | | | |||| || | |||| || ||||||| || || Sbjct 331168 AAAATGAAGGATATAGCTGAATCATAT-TTGGGCACACAAGTAACTAATGCAGTTATCAC 331110 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 |||||| || || |||||||| || ||| | || |||||||||||||| ||| ||| || Sbjct 331109 TGTACCCGCTTACTTTAATGATTCTCAAAGGCAGGCTACTAAAGATGCGGGAGCTATCGC 331050 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || | || || ||||||||||| || |||||||| |||||||| | || |||||| | Sbjct 331049 CGGCTTAAACGTACTTCGTATTATAAACGAACCTACCGCTGCTGCCTTGGCTTATGGATT 330990 Query 550531 TGATAAACAT 550540 || ||| || Sbjct 330989 AGACAAAAAT 330980 >seq51825 Length=164432 Score = 158 bits (174), Expect = 1e-32 Identities = 268/381 (70%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 550160 AATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG 550219 ||||| | ||||| | |||||||| ||||| | |||||||||| |||||||| | Sbjct 24866 AATCCAAAAAATACAGTCTTTGATGCAAAACGAATGATTGGAAGAAAGTTTAATGACCCT 24807 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT 550279 | |||| ||| || ||||||||||| ||| || || | | | || |||||| Sbjct 24806 AAAATTCAACAAGACATTAAGCATTGGCCATTCGAAGTTATATCGGATAACGGGAAACCT 24747 Query 550280 TATATTGAAG-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC 550338 |||| | | | | | |||| ||| | ||| | || ||| || |||| || Sbjct 24746 GCAATTGTGGTCCAAT-ACAAAGGCGAAAGGAAAAAGTTTACGCCTGAAGAAGTTTCCTC 24688 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG-TTGGTCAAGAA--GTTAC 550395 |||| | || | ||||||||||||||||| | | | | |||| | | | ||||| Sbjct 24687 TATGATATTGACAAAAATGAAACAAACAGCT-GAGATGTACCTTGG--AGGTACGGTTAC 24631 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| || ||||||||||| ||||| || || ||||| ||||||||||| || ||||| Sbjct 24630 TGATGCTGTCATAACTGTACCGGCATACTTCAACGACTCTCAACGTCAAGCGACCAAAGA 24571 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || || || || || ||||| |||||| | || ||||||||||| || ||||| || Sbjct 24570 CGCCGGGGTAATCGCCGGCCTTAACGTTCTTAGAATAATCAATGAACCAACAGCTGCCGC 24511 Query 550516 ACTTGCATATGGACTTGATAA 550536 || || ||||| | ||||| Sbjct 24510 CCTCGCTTATGGCTTAGATAA 24490 Score = 123 bits (136), Expect = 2e-22 Identities = 254/373 (68%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTAT--CATGGTGTGTTG 551847 || ||| |||| ||||| ||||| |||||||| | || ||||| ||| | || Sbjct 24377 GGCGATACTCACCTTGGAGGCGAGGATTTTGACAGCCGAATGGTAGACCATT-TCAGTC- 24320 Query 551848 AAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTC 551907 |||| ||| |||||||| |||| || | || | | |||||||| | | Sbjct 24319 AAGAGTTTGAACGAAAATACAAGAAAAATATTTCCGGCAATCCGAAAGCTCTCAGAAGGT 24260 Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 |||||||||| || |||||||| ||| || ||||||| || ||| || | | ||| | Sbjct 24259 TAAGAACTGCATGTGAAAGAGCTAAAAGAACTCTTTCTTCCAATACAGAAGCTAGTATAG 24200 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || |||| | || ||| ||||| |||| || | | || || || | ||||| Sbjct 24199 AAATAGACGCTTTGCATGAAGGAATAGATTTCTATTCAAAGCTCTCTAGAGCTAGATTTG 24140 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 |||| | ||||| ||| | ||| || ||||| | | ||||| ||| | | ||| | || Sbjct 24139 AAGAATTATGTTCGGATTTATTTCGACAAACATTGGTGCCAGTTGAAAATGCTTTGAAAG 24080 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGA---AATTGTGCTTGTTGGTGGATCTACAA 552144 || ||||||| | | | || || |||| |||| || ||||| |||||||||| Sbjct 24079 ATGCAAAGATGAACACAAGGGAAATAGATGATGTAATTTTG---GTTGGAGGATCTACAA 24023 Query 552145 GAATTCCTAAAAT 552157 ||||||| ||||| Sbjct 24022 GAATTCCGAAAAT 24010 Score = 95.1 bits (104), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || ||||| | ||||| || || || || | ||| | || |||| ||||| || Sbjct 25232 GGGATAGACCTTGGAACTACTTACTCCTGCGTGGCTGTCTTCCAGCATGGCAAAGTGGAG 25173 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||| |||||||||| |||||||||| || |||||||||||| | ||| | ||||| Sbjct 25172 ATCATTACCAATGATCAGGGTAACAGAATCACACCATCTTATGTTGCCTTCTCCGAAACC 25113 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 |||| ||| |||| || |||| ||| |||| Sbjct 25112 GAACGGTTAATTGGGGAATCAGCCAAAAATCA 25081 >seq24811 Length=575 Score = 156 bits (172), Expect = 3e-32 Identities = 320/470 (68%), Gaps = 8/470 (2%) Strand=Plus/Plus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 ||||||| ||||| || ||||| || ||||| || || | ||| |||| ||||| | Sbjct 94 TAGGTATTGATTTGGGTACCACGTACTCGTGTGTGGGCGTGTTCCAACATGGGAAAGTGG 153 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 |||| || ||||| || || || ||||| || || || |||||||| | ||||| || | Sbjct 154 AAATCATCGCCAACGACCAGGGCAACAGGACCACGCCCTCTTATGTGGCGTTCACCGACA 213 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATA 550172 | || | | | | || ||||| || || | || | ||| || || || | ||| | Sbjct 214 CCGAGCGTCTCATCGGCGATGCCGCCAAGAACCAGGTGGCCA-TG--AACCCCAACAACA 270 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || || ||||| |||||| | || || | | || | || | |||||||| |||| Sbjct 271 CCATCTTCGATGCCAAACGTCTTATCGGTCGCAAATTCGAAGACGCCACTGTTCAAGCAG 330 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292 | |||||||| ||||| ||| | | || | || | ||| ||||| | || | | | Sbjct 331 ACATGAAGCACTGGCCATTCGAGGTAGTCAGTGATGGTGGGAAACCAAAGATCAAGGTTT 390 Query 550293 CTCATGAAGGATCTGTTAA-ACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | || ||||| | ||| ||| | ||| || ||| || | || ||||| | | Sbjct 391 CATATAAAGGAGAGGATAAGACATTCTTC-CCTGAAGAAGTAAGCTCAATGGTGCTTACA 449 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 |||||||| ||||||| |||| |||| || || ||||||| || || Sbjct 450 AAAATGAAGGAAACAGCTGAGGCTTACCTTGGCAAAACTGTGCAAAATGCAGTCATTACG 509 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || ||||| || || ||||||||||| || || || ||||||||||| || Sbjct 510 GTTCCAGCGTACTTCAATGACTCACAGCGACAGGCCACTAAAGATGCGGG 559 >seq33159 Length=163697 Score = 114 bits (126), Expect = 1e-19 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| || | ||||| ||| |||||| ||||||||| || | || || | Sbjct 97463 ACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACC 97404 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || || || || ||||| ||||| | ||||||||| || ||||| ||||| || Sbjct 97403 ATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTT 97344 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||||||||||| ||| || |||||| || || | || | || || | || | Sbjct 97343 ATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTG-ATGGTTCCACCTCTAATGTGA 97285 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || || || |||||||| ||||| ||||| Sbjct 97284 TAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 98.7 bits (108), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | |||||||||| || || || ||||| |||| || || | | Sbjct 98149 AGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGT 98090 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || || ||||| || || | || ||||| || || ||||| ||||| Sbjct 98089 CCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 98030 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || || ||||| ||| || |||||| || || | | | ||| ||||| Sbjct 98029 TTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACTTCCAGAGTG 97970 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||||||||| | ||||| ||||| || |||||| Sbjct 97969 ATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCATA 97931 >seq46927 Length=587355 Score = 113 bits (124), Expect = 4e-19 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||||||||| || || ||||| || || || ||||||||| | || || || |||||| Sbjct 280449 ATGCAGTAATCACGGTTCCAGCGTACTTCAACGACTCACAAAGGCAGGCCACAAAAGATT 280390 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || |||| || |||||||| ||||| || || ||||| ||||||||||| Sbjct 280389 CGGGTACCATCTCTGGCCTGAATGTTCTCCGTATCATAAACGAACCGACTGCTGCTGCGA 280330 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 |||| || || ||||| ||| | | | ||||| ||||||||| || || || Sbjct 280329 TTGCGTACGGTCTTGACAAAAAGGGAGGTGGAGAACGTAATGTACTTATTTTCGA 280275 >seq27463 Length=372575 Score = 89.7 bits (98), Expect = 4e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| || | | ||| | | |||||| | ||||| ||||| || || | |||| Sbjct 145684 ATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTT 145743 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| || ||||| || ||||| ||||||||||| |||||| || || || Sbjct 145744 TGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTG 145803 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 |||| | | || | || | |||||||| || || ||||||||||| || ||| Sbjct 145804 TCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGC 145863 Query 563473 AT 563474 || Sbjct 145864 AT 145865 >seq33871 Length=3159 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | ||||||||| || || || ||||| |||| || || | | Sbjct 2908 AGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGT 2967 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || || ||||| || || | || ||||| || || ||||| ||||| Sbjct 2968 CCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 3027 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || ||||| ||| || |||||| || || | | | || ||| | || Sbjct 3028 TTGTCCTGGATTTTAGCTTTGACATTCTCAATGGTGTCTGAAGGT-TCCACTTCCAAGGT 3086 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| ||||| || ||||||||||| || |||||| Sbjct 3087 GATGGTTTTGCCAGTTAGGGTTTTAACGAAGATCTGCATA 3126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026098073680300