Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20129 161 8e-35 seq55175 143 2e-29 seq26923 120 2e-22 seq33159 114 1e-20 seq36087 105 5e-18 seq18898 98.7 8e-16 seq9815 96.9 3e-15 >seq20129 Length=608 Score = 161 bits (178), Expect = 8e-35 Identities = 216/298 (72%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 7789 CCCGGCCCAGCCAACCCTAGGTACGCGTTGGAGCAAGTGCGTCTGCTCACGTTCAAGGAC 7848 |||||||| | |||| ||||||| | || | |||||| | ||| ||||| ||| Sbjct 5 CCCGGCCCCGTGCACCCCCGGTACGCCTCCGAAGCGGCGCGTCTTCGCACCTTCAAAGAC 64 Query 7849 TGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGATTATACTACACG 7908 |||||| | |||| ||||| ||||| | | | || ||||| || || | |||||| Sbjct 65 TGGCCGCGGTGTATGAAGCAAAAACCCGAAGAATTGGCGGAAGCCGGTTTCTTCTACACC 124 Query 7909 GGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAAGATTGGGAGGAA 7968 |||| ||| || | || || || |||||||| ||||| || || ||||| |||||| | Sbjct 125 GGCCACGGAGACAAAACGAAATGCTTCTACTGCGACGGTGGCCTGAAAGACTGGGAGAAC 184 Query 7969 AACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCATATGTCAAACTA 8028 |||| | || |||||||| |||||||||||||| || | |||||| || || |||| Sbjct 185 GACGACGTCCCATGGGAGCAGCACGCGCGCTGGTTCGACAGATGCGCTTACGTTCAACTG 244 Query 8029 GTCAAAGGGGAG-GAATATGTTCAGAAGGTAATTACTGAAGCGTGCGCCGTTTCAACG 8085 || |||||| | || || ||||| || || || | || || |||||| | || ||| Sbjct 245 GT-AAAGGGCCGCGACTACGTTCAAAAAGTGATGTCGGAGGCCTGCGCCATCTCGACG 301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8170 CGTAACGTGTGCTTTGTTCCGTGCGGACATGTGGTGGCATGCGCCAAGTGCGCTTTAACC 8229 || ||||||||||| || |||||||| || |||||||| || ||||||||||| || | Sbjct 422 CGCAACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGTGCCAAGTGCGCACTATCG 481 Query 8230 ACGAACACGTGCCCAATGTGTAGGCAGAAGTATATAAACGCTGTACGTGTTTACTATTCT 8289 ||| ||| |||||| ||||| ||| || || | |||||| || || | |||| || Sbjct 482 ACGGACAAGTGCCCGATGTGCCGGCGGACGTTCACAAACGCGGTGCGCCTCTACTTCTCG 541 Query 8290 TGA 8292 ||| Sbjct 542 TGA 544 >seq55175 Length=171662 Score = 143 bits (158), Expect = 2e-29 Identities = 457/702 (65%), Gaps = 25/702 (4%) Strand=Plus/Plus Query 27762 TACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACG 27821 |||| || || |||||||| ||| | |||| || ||| | || ||||| || || || | Sbjct 39142 TACCAATTCCTAATCTGACTCATCTTTTGTATGGTTTTATTCCAATTTGTGGAGGCGATG 39201 Query 27822 GTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAAAGTCATG 27879 | ||||| || || |||| | ||| || | |||| | | || || ||||| Sbjct 39202 GCATCAATGACAGTTTAAAGGAAATCG--AAGGCAGTTTTCAAGCTCTTCAGCGTTCATG 39259 Query 27880 CTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACC 27939 | ||| | || || | || ||| |||||| |||| || || ||||| || Sbjct 39260 CAGTGGCCGTGAAGATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAGCC 39319 Query 27940 GCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGC 27999 || ||||| | | ||||| || || ||||| || || ||||| ||| ||||| | Sbjct 39320 ACAGAAGGGCTTGTCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGATGTC 39379 Query 28000 CATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAG 28059 | | |||| | || |||| || || || || ||||| || |||||||| Sbjct 39380 CCTTAAACAAGCTAGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTTGC 39439 Query 28060 CGATCCATTCTTTTTTATGCAC-GACCCGGCCAAGCGTGCCGTGTTTGTAGAGTCTGTGC 28118 ||||| ||||| ||| | ||| ||| | ||||| | | || || || |||||| Sbjct 39440 TGATCCTTTCTTCTTTTT-CACTGACAAAGTGAAGCGGGACCGCTTCGTTGATTCTGTGA 39498 Query 28119 GCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGG 28178 || || || ||||| ||||||||||| || || || || | || ||||| || || | Sbjct 39499 AAGATTTCCTTCAAACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTG 39558 Query 28179 GTGGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGTACACCG 28238 | || |||||||| ||||||| | ||| | ||||| | || | | || || Sbjct 39559 GCGGTAAGGGAGCTAACCCCGACCTTGGT-AGCCCGAAA--GATGGAGAAGTTTA----- 39610 Query 28239 CGCTGTTGCGCGAACTAA-GATTT-------ATGCTGGACGAGTTGGCGGaaaaaaaCGA 28290 ||||| | || || || || ||| | ||||| | | ||| ||| | Sbjct 39611 ---TGTTGAACTAATGAAGGAGTTGCGCGAAATGTTAAACGAGCTTTCCGAAGAAACGGG 39667 Query 28291 TCGCGTCTACCAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAA 28350 | ||| | || ||| | |||||||| || || ||||| || ||||| || | Sbjct 39668 TAAGAAATACGAGCTCACCTCAGCTATTAGTGCTGGATGGGATAAGATTCAAGTCGTAGA 39727 Query 28351 CTACGCTTCGGCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGG 28410 ||| |||||||| || |||||||||| ||| | ||||||||||| || | || Sbjct 39728 TTACAGCGAAGCCCAAAAGTATATGGACCACATCTTCCTCATGAGTTACGACTTCAAAGG 39787 Query 28411 CGCCTGGTCCAACACCGACGTGGGCCATCAGACACCGCTTTA 28452 |||||||||||| | | | || |||||||| || || || Sbjct 39788 TGCCTGGTCCAACGACACCCTCGGTCATCAGACTCCCCTATA 39829 >seq26923 Length=415599 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 7531 CGTGAAGAGGCTCGGTTAAGCACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCAA 7590 || ||||||| ||| | | || ||| | || ||||||||| || || ||| || Sbjct 192507 CGCGAAGAGGAGCGGCTCAAGACGTTCGACAAGTGGCCCGTGGACTTCCTGTCGCCCGAA 192566 Query 7591 ACTATGGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTTT 7650 | || |||||||| || ||||| | || || | ||||| || |||||||| ||| Sbjct 192567 CAGCTCGCGCGCAACGGCTTCTATTACCTCGGCCGTGGCGACGAAGTTCGTTGCGCCTTT 192626 Query 7651 TGTAAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAAG 7710 |||||||| ||||||||||| |||||||| || ||||| || | ||| ||||| | | Sbjct 192627 TGTAAAGTCGAAATCATGCGCTGGGTCGAGGGCGACGACCCTGCGAAAGACCACCAGCGT 192686 Query 7711 TGGGCACCGCAGTGTCCGTTTCTG 7734 ||||| || || ||||||||| || Sbjct 192687 TGGGCCCCACAATGTCCGTTTTTG 192710 >seq33159 Length=163697 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || || || ||| || || || ||||| ||||| Sbjct 97018 CCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 96959 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| ||| || ||||| || |||| | ||| || || | |||| Sbjct 96958 AGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 96899 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||| ||| | | | || || | ||||||| Sbjct 96898 ATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 96839 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTG 48772 |||| || || || || || ||||| || || ||||||||||||||| |||| Sbjct 96838 TCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATCTTGTG 96786 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || | || | |||||| || || || ||||||||||||||||| || || Sbjct 97475 GCCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGA 97416 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | ||||||||| ||||| || || || || ||||| | ||| Sbjct 97415 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 97356 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || ||| ||| ||| ||| | | | ||||| | ||||| Sbjct 97355 AATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCAC 97296 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || || | ||||| |||||||||||||| Sbjct 97295 CTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || || | || Sbjct 97921 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGT 97862 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || |||| | ||| || || | ||||| |||||| Sbjct 97861 CCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCC 97802 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | || || || | ||| || |||| || Sbjct 97801 TTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTG 97742 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||||||||| |||||||| Sbjct 97741 ATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 >seq36087 Length=321 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| || ||| ||| || || |||||||| ||||| ||| | ||| | || Sbjct 211 CAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATC 152 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||| ||||| || || || |||||||| || || | ||| | |||||||||||| Sbjct 151 CTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 92 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || || || ||| | | || || || | |||||| |||| ||| || || Sbjct 91 TTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACTTCCAACGTGATGGT 32 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGC 48764 || ||||| | ||||| ||||| |||||| Sbjct 31 CTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq18898 Length=402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | |||||| || || || || || || |||||||| || || Sbjct 77 CCGCCACGAAGACGTAGCACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGAA 136 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| |||||| || || |||||||| ||||| || || | ||| Sbjct 137 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAATATCAGACGCTGCTGGTCAGGAGGA 196 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | || || || || || ||| Sbjct 197 ATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTTTCGATAGTGTCAGAGGCTTCTACC 256 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || |||||||| | || || |||||||| ||||| Sbjct 257 TCGAGGGTGATTGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 303 >seq9815 Length=2744 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 || ||||| ||||||||||| || ||||| ||||| ||||| ||||| || || | || Sbjct 2481 GGGTAAAAAATTTGTTCACAGATCAATTGTGCAATTCTGTCGCCCTTGTTAACAATGAAA 2540 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 ||| || |||||||| || || || ||||| || ||||| | || || ||||| || Sbjct 2541 TCTTCATCAGAATGATTAAAGAGTACTACTCCAACATTACCACGATAGTCTTCATCAATG 2600 Query 9187 ACACCAGC 9194 |||||||| Sbjct 2601 ACACCAGC 2608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380656857321810