Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq55175 239 4e-58 seq33159 95.1 1e-14 seq27463 95.1 1e-14 seq32636 82.4 6e-11 >seq55175 Length=171662 Score = 239 bits (264), Expect = 4e-58 Identities = 593/893 (66%), Gaps = 13/893 (1%) Strand=Plus/Minus Query 106120 ACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGTTGGGATCGACG 106179 || || ||||| ||||| |||||||| || || ||||| | || || || || | || Sbjct 39958 ACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTTCTTAGGGTTCACA 39899 Query 106180 TCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTTCGGAATTCCAA 106239 |||| || || | || | ||| || || || |||||| || |||||| Sbjct 39898 CCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGGTATAAGTTTCTTTGGGATTCCAT 39839 Query 106240 CTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGT-GTTCGACCACGCCCCTTTAAA 106298 ||| ||||||| | || |||| || || ||| ||| ||||| || ||||| || Sbjct 39838 GCAGGGGCATATAGGGGAGTCTGATGACCGAGGG-TGTCGTTGGACCAGGCACCTTTGAA 39780 Query 106299 ATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTATAGTTTACCAC 106358 ||||||||||||||||| || | ||||| ||| ||||| || ||| | || | ||| || Sbjct 39779 GTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTAATCTACGAC 39720 Query 106359 GGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAATTTGCCCGTTTG 106418 ||| || || | || || || ||||| ||| | ||||| || ||||||| Sbjct 39719 TTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTACCCGTTTC 39660 Query 106419 CAGTTCTAAT---TCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACATATGTTTC 106475 ||| | |||| || ||| |||||||||| | || || | ||||| ||| Sbjct 39659 ---TTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGTTCAACATAAACTTC 39603 Query 106476 GGCGTCGCGTTCCGCATCGCCCAAAGAAGGA-TTGGCCCCTTTGCCGCCTGGAAATTCCC 106534 | || ||| | | |||| | || || || || || ||||| || ||||||| Sbjct 39602 TCCATCT--TTCGGGCTA--CCAAGGTCGGGGTTAGCTCCCTTACCGCCAGGGAATTCCC 39547 Query 106535 AATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACAGAATTTA 106594 |||| || || || ||||| || || ||||| ||| | || || || ||||||| | Sbjct 39546 AATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCACAGAATCAA 39487 Query 106595 CAAACACGTTTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATAGCGTCCAAC 106654 | || || | || | |||| | ||| |||| || || | || ||||| | Sbjct 39486 CGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGAAGAAAGGATCAGCAAGAGTCCAGC 39427 Query 106655 CGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGCCATCAACTGTC 106714 | || || || || || | ||| | | ||| | || |||| | ||||| ||| | Sbjct 39426 CCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGACATCAGCTGAC 39367 Query 106715 CAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCTTCTGTATGG 106774 |||| || || |||||||| || ||||||| |||| ||| || || ||||| || | | Sbjct 39366 CAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGACAAGCCCTTCTGTGGCTTTTGAAGAG 39307 Query 106775 CAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCATGATTTTTGCA 106834 ||||||| ||||||||||| ||||| || ||||| | || || ||||||| || | Sbjct 39306 CAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTGCATGAACGCTGAA 39247 Query 106835 AAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCACCGCCGCAGA 106894 || || |||||| || ||| ||||| || || || ||||| || || || | Sbjct 39246 GAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTCATTGATGCCATCGCCTCCACAAA 39187 Query 106895 TGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTATCTACGGGAA 106954 | ||||||||||| ||||| | ||| | | ||| || | || | ||| || || | Sbjct 39186 TTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATTGGTATACGATCGACTGGGA 39127 Query 106955 AATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACAGTTTTGTCC 107007 | || || || || |||||||| || || || || | ||| |||| || Sbjct 39126 ATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGCTCCAACAACTTTGCCC 39074 >seq33159 Length=163697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| |||||| |||| || || || || || || |||||| || Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | || | || ||||||| || || || || || | ||| ||||| Sbjct 97307 AGACACCATTGAGAATGTTAAAGCAAAAATTCAA-GATAAGGAAGGCATTCCCCCAGATC 97365 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 28729 | || | |||||||||||||| || || | |||||| || | ||| | |||| || Sbjct 97366 AGCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTT--CCGACTA 97423 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||||||||| || ||| |||| | | || ||||||| || Sbjct 97424 CAATATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGGCAT 97477 >seq27463 Length=372575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 28546 GTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGG 28605 || ||| |||||| || || || ||||| | |||||||||||||| || || | Sbjct 145873 GTTTAACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTG 145814 Query 28606 AACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCC 28664 || | || || || | | || | || || |||| || ||||||||||| | || Sbjct 145813 AAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCA 145755 Query 28665 GTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 28724 |||||| || ||| | ||||| || |||||||| ||||||||| ||| || | Sbjct 145754 CCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCG 145695 Query 28725 GATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||| || || ||||| || || ||| |||| || || | |||||||| Sbjct 145694 GACTACAACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGG 145639 >seq32636 Length=346 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || | || ||||||||||| ||| ||| ||| ||||| Sbjct 95 AATGCAAATCTTCGTGAAGACCCTCACTGGTAAAACCATCACCTTGGAAGTGGAGCCTTC 154 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || ||| ||||| || || | || ||| || Sbjct 155 GGACACCATTGAGAATGTAAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCA 214 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || ||||| || ||||||||| |||||||| | || || |||| ||||| Sbjct 215 GCAGCGTCTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACCCTGTCCGACTATAA 274 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || || || || || ||| Sbjct 275 CATCCAGAAGGAGTCCACCCTCCAC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425091285968130