Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq33159 113 8e-20 seq32636 91.5 3e-13 seq32086 86.0 1e-11 >seq33159 Length=163697 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| || | |||| ||| || || || ||||| Sbjct 97933 ATACCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCT 97874 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| |||| || || ||||| || || || ||||| || || || Sbjct 97873 GAGAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGG 97814 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| ||||| | || | |||| ||||||||| |||| |||| Sbjct 97813 GGAATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCA 97754 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || |||||||| || || ||||||||||| || ||||| Sbjct 97753 ACTTCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || ||||| | ||| | ||| | ||| || || |||||||| Sbjct 97705 ATACCACCACGCAGACGGAGTACTAAATGGAGTGTGGACTCCTTCTGGATGTTATAGTCT 97646 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| ||||| || || || ||||| || || | || || || || Sbjct 97645 GAGAGTGTGCGTCCATCTTCTAACTGCTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGG 97586 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || ||||| | || | ||| || ||||| |||| ||| Sbjct 97585 GGAATACCTTCCTTATCCTGGATTTTAGCCTTGACATTCTCGATGGTATCCGAAGGTTCA 97526 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || ||||| || | || || ||||| |||||||| Sbjct 97525 ACTTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATTTGCAT 97476 >seq32636 Length=346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||||||||| | || | | ||| || | |||||| || || || || | | | Sbjct 277 ATGTTATAGTCGGACAGGGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAGACGC 218 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || ||||| || || || || || | |||| ||| ||| || Sbjct 217 TGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTTACATTCTCAATGGTG 158 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| ||||| | || || |||||||| || || || || || || |||||| Sbjct 157 TCCGAAGGCTCCACTTCCAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAGATTTGC 98 Query 193359 ATT 193361 ||| Sbjct 97 ATT 95 >seq32086 Length=116408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 263776 TAATATATAATATAATAAAGGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGA 263835 || |||||| ||||||||||||||||| ||||||| |||||| |||| || |||||| Sbjct 62116 TATTATATACACAAATAAAGGGAGGTCCGTTGCTACTACGTAAGCTGGTGTTGGCGAGGA 62175 Query 263836 ACCGGTCTAACTCCTTGTCA 263855 ||||||||| |||||| || Sbjct 62176 TCCGGTCTAATTCCTTGCCA 62195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898974373730400