Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq39759 120 4e-22 seq33159 114 2e-20 seq27463 107 3e-18 >seq39759 Length=128263 Score = 120 bits (132), Expect = 4e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||| ||| | |||||||| || || | ||| || ||||| || || |||| Sbjct 66904 TTTCTTTGGGATCCCTGATATAAGTATCAATCAGCAATGAGTACATCTCTGAGTGTACAT 66845 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 | |||||||| || || || | |||||| | || || || | ||||| || Sbjct 66844 TCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTG 66785 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 |||||| ||| ||||| || |||||||||||||| |||| || || ||||||||||| | Sbjct 66784 AAAATCGTTCCACCAAGTTTTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAATA 66725 Query 18591 CATATTTAATGAAATG 18606 ||| |||||| || || Sbjct 66724 CATGTTTAATAAAGTG 66709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||||||||| ||||| ||||| ||||| || ||||| || || |||||||| |||||||| Sbjct 69328 GTATTCTCCTACTTTCTTCTCAAAGAAGTTAGTCTTGCCCTCTAATGATATCAAATTCAT 69269 Query 17929 AAAATCAAATGGATTAGTGGTTTTATAA 17956 || ||||||||||| | || |||||| Sbjct 69268 GAAGTCAAATGGATTCTTCGTCTTATAA 69241 >seq33159 Length=163697 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||||||| | || || || ||||| |||||||| || ||| || Sbjct 97247 AATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATC 97306 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 97307 AGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCA 97366 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | ||| |||||||||||||||||| | || | || || || || Sbjct 97367 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACAA 97426 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||||| | || ||||| || ||| | | || ||||| || Sbjct 97427 TATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 >seq27463 Length=372575 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||| | || || ||||| || || ||||| || |||| || Sbjct 145866 AATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 145807 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || ||| ||||| ||||| ||||| ||||| || ||||| || Sbjct 145806 TGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCA 145747 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||||| || ||| | |||||| | ||||| || || || || Sbjct 145746 GCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCGGACTACAA 145687 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || ||||| || || || || | |||| ||| Sbjct 145686 CATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGGT 145638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731318796252000