Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq33159 127 4e-24 seq27463 127 4e-24 seq36087 109 1e-18 seq21507 104 5e-17 seq39759 102 2e-16 >seq33159 Length=163697 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||||||||| | || | ||| || ||| ||||| || Sbjct 97705 ATACCACCACGCAGACGGAGTACTAAATGGAGTGTGGACTCCTTCTGGATGTTATAGTCT 97646 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| || || || || ||||||||||| || | || || || || Sbjct 97645 GAGAGTGTGCGTCCATCTTCTAACTGCTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGG 97586 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || |||||| || ||||| || | ||| || | ||| Sbjct 97585 GGAATACCTTCCTTATCCTGGATTTTAGCCTTGACATTCTCGATGGTATCCGAAGGTTCA 97526 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| ||||| || || || || | ||| || ||||| Sbjct 97525 ACTTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATTTGCAT 97476 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | |||| ||| || ||| || || || Sbjct 97933 ATACCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCT 97874 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| || | || || || || ||||| || ||||| || || || Sbjct 97873 GAGAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGG 97814 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| |||||| || ||||| |||| ||| || | || Sbjct 97813 GGAATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCA 97754 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||||||||| | |||||| | ||| |||||||| Sbjct 97753 ACTTCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || ||||| | |||| ||| || ||| || || ||||| Sbjct 98159 ACCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 98100 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| ||| |||| || | || || || || ||||| || ||||| || || || || Sbjct 98099 GAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 98040 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || |||||| ||| ||||| || | || || | || || Sbjct 98039 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGAC 97980 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||| |||||||||||||| || ||||| | || |||||||| Sbjct 97979 TTCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 >seq27463 Length=372575 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| |||| ||| | || || || || | || | || || ||| || || || | Sbjct 145637 TACCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCG 145696 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| ||||| ||||| || || ||||| ||||| || ||||| |||| Sbjct 145697 ACAAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 145756 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || || ||||| ||||| ||||| ||||||||| |||| || || | ||| | Sbjct 145757 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAA 145816 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | |||| || ||||||||||| || | ||||||| || ||||||||| Sbjct 145817 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCATT 145866 >seq36087 Length=321 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| || | || |||||||| | ||| | ||| || |||||| || ||| Sbjct 228 ATACCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCA 169 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||||||||||| ||||| | || ||| || ||||| Sbjct 168 GAGAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGG 109 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| |||||| || ||||| |||| || || | || Sbjct 108 GGGATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCC 49 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | || ||||| || || || | ||||| | ||| |||||| Sbjct 48 ACTTCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq21507 Length=372 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| |||||| || || || | ||| || | || || | |||||||| Sbjct 218 GTAGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGGCCGTCTTCTAGCTGTTTACCC 159 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 ||||||||||| || || ||||| || || ||||| || || ||||| ||||| ||| Sbjct 158 GCAAAGATTAACCTTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATTTTGGCTTTC 99 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || | ||| || | || || |||||||| ||||| || || || | || Sbjct 98 ACATTTTCGATGGTATCGGAGGGCTCAACCTCTAGAGTGATGGTCTTGCCCGTGAGGGTC 39 Query 192520 TTAATAAATATCTGCATTTT 192539 || | || |||||||| || Sbjct 38 TTGACGAAAATCTGCATCTT 19 >seq39759 Length=128263 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 50112 AAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT 50171 || || ||||| || || |||||| |||||||| ||||| ||| |||||| ||| Sbjct 66869 AATGAGTACATCTCTGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTT 66810 Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 ||||| | |||||||| | |||||||| || || || ||| || |||||| Sbjct 66809 GCTTCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAGTTTTCATTAACTATACCA 66750 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 ||||| || || || ||||| || || | ||||||||| || | ||| ||||| ||| Sbjct 66749 TCAGAAGCAGCAAAAAATGCCAATACATGTTTAATAAAGTGCCTCTCACAGTCTTTCAAA 66690 Query 50292 TTTTCCCAA 50300 |||||||| Sbjct 66689 CTTTCCCAA 66681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983717252584500