Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq27463 118 2e-21 seq39759 111 3e-19 seq36087 100 5e-16 seq33159 100 5e-16 seq36829 87.8 3e-12 >seq27463 Length=372575 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || |||| ||| | || ||||| ||||| || || || || ||||| Sbjct 145684 ATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTT 145743 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || ||||| || || ||||| ||||| ||||| ||||||||| ||||| Sbjct 145744 TGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTG 145803 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| || |||| || ||||||||||| || | ||||||| ||| |||||| Sbjct 145804 TCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGC 145863 Query 172068 ATT 172070 ||| Sbjct 145864 ATT 145866 >seq39759 Length=128263 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 || ||||| || || |||||| |||||||| ||||| ||| |||||| ||||||| Sbjct 66866 GAGTACATCTCTGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCT 66807 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | |||||||| | |||||||| || || || ||| || ||||||||| Sbjct 66806 TCACCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAGTTTTCATTAACTATACCATCA 66747 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 || || || || ||||| || |||| ||||||||| || | ||| ||||| ||| || Sbjct 66746 GAAGCAGCAAAAAATGCCAATACATGTTTAATAAAGTGCCTCTCACAGTCTTTCAAACTT 66687 Query 39597 TCCCAA 39602 |||||| Sbjct 66686 TCCCAA 66681 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 38819 CATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTC 38878 ||||||| | || |||||||| ||||| || || || ||||| || || || || Sbjct 69346 CATCACACCCCACTTCTGGTATTCTCCTACTTTCTTCTCAAAGAAGTTAGTCTTGCCCTC 69287 Query 38879 TAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAA 38924 ||||||||| |||||||| || ||||||||||| || || |||||| Sbjct 69286 TAATGATATCAAATTCATGAAGTCAAATGGATTCTTCGTCTTATAA 69241 >seq36087 Length=321 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| |||| || |||||||| | ||| | ||| || ||||| || || Sbjct 228 ATACCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCA 169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | ||||||||||| || || | || ||| |||||||| Sbjct 168 GAGAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGG 109 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| |||||| || ||||| ||||| || || | || Sbjct 108 GGGATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCC 49 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | || ||||| || || || | ||||| | || |||||| Sbjct 48 ACTTCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq33159 Length=163697 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | |||| ||| || || || || ||| Sbjct 97933 ATACCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCT 97874 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | || || || || || || || ||||| ||||| || Sbjct 97873 GAGAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGG 97814 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| |||||| || ||||| |||||||| || | || Sbjct 97813 GGAATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCA 97754 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || |||||||||||||| | |||||| | || |||||||| Sbjct 97753 ACTTCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | || ||||| | |||| ||| || || || || || || Sbjct 98159 ACCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 98100 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | ||| | || || | || || || || || || || ||||| ||||| || || Sbjct 98099 GAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 98040 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || |||||| ||| ||||| || || || || | || || Sbjct 98039 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGAC 97980 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||| |||||||||||||| || ||||| | ||| |||||||| Sbjct 97979 TTCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 >seq36829 Length=357796 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/133 (76%), Gaps = 11/133 (8%) Strand=Plus/Plus Query 256126 CCCACTGCTGGGCACAGGCCTCCTCTCGGAATGAGAGGGCTTGGGCCATAGTTC-CCACG 256184 |||||||| |||||||||||||||||| || ||||||| |||||||| | | ||||| Sbjct 87287 CCCACTGCAGGGCACAGGCCTCCTCTCCGA--GAGAGGGAAGGGGCCATAATCCGCCACG 87344 Query 256185 CGGGCCCAGTGCGGATTGGGAACTTTGAAAAATTAGTAA--TAAACAATAATATATTCTT 256242 | |||||||||||| |||| || | | |||| | | || ||| ||||| || Sbjct 87345 CCGGCCCAGTGCGGGTTGG------TGGATTACTAGTCACTTCTACCATATTATATACTC 87398 Query 256243 ATATTATATACAA 256255 |||||||||| || Sbjct 87399 ATATTATATAAAA 87411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904451830326000