Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq55175 226 2e-54 seq20129 199 3e-46 seq26923 111 1e-19 seq27267 87.8 1e-12 seq21507 86.0 5e-12 seq27463 82.4 6e-11 >seq55175 Length=171662 Score = 226 bits (250), Expect = 2e-54 Identities = 608/913 (67%), Gaps = 19/913 (2%) Strand=Plus/Plus Query 29145 CATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTCAAA 29204 ||||| ||||| ||||| || || ||||| || ||||| || |||| ||| | || Sbjct 39162 CATCTTTTGTATGGTTTTATTCCAATTTGTGGAGGCGATGGCATCAATGACAGTTTAAAG 39221 Query 29205 ACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGTTCAGATTTCAAA 29264 || ||||||||| | || || || || || |||| |||||| ||||||||| Sbjct 39222 GAAATCGAAGGCAGTTTTCAAGCTCTTCAGCGTTCATGCAGTGGCCGTGAAGATTTCAAG 39281 Query 29265 GTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGCGTGTCTGCGTGG 29324 || | ||||||||||| ||||| || | ||||| || || |||||| ||||| | ||| Sbjct 39282 GTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAAGCCACAGAAGGGCTTGTCTTCTTGG 39341 Query 29325 AACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTGGCCAATCCGCAC 29384 || || || |||||||| || || |||||||| ||| | || | || | ||| || Sbjct 39342 AATGAACCTTACAAAGGCAATTTTGGTCAGCTGATGTCCCTTAAACAAGCTAGGCCGGAC 39401 Query 29385 CTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTCTATTTCATGCAC 29444 || ||||| || || ||||| || |||||||| | | || || |||| | | | ||| Sbjct 39402 CTTAAAATCCTACCTTCCATTGGGGGCTGGACTCTTGCTGATCCTTTCT-TCTTTTTCAC 39460 Query 29445 -GACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCTGCAGGTGTGGAA 29503 ||| | || ||| || || || || || | ||| || || || ||||| Sbjct 39461 TGACAAAGTGAAGCGGGACCGCTTCGTTGATTCTGTGAAAGATTTCCTTCAAACCTGGAA 39520 Query 29504 GTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGGCGCCAA-CCCGA 29562 ||| || || || || ||||| || ||||| || || || || || || || || ||||| Sbjct 39521 GTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAACCCCGA 39580 Query 29563 CACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTACTA---AAGGAATTGC 29619 | ||||| | | | | || | || | || | | || |||| ||||| |||| Sbjct 39581 C-CTTGGTAGCCCGAA---AGATG--GAGAAGT-TTATGTTGAACTAATGAAGGAGTTGC 39633 Query 29620 GCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTACGAGTTGACAAGCGCA 29678 ||| |||| | ||||| || | | ||||||| || | |||||| | || || Sbjct 39634 GCGAAATGTTAAACGAGCTTTCCGAAG-AAACGGGTAAGAAATACGAGCTCACCTCAGCT 39692 Query 29679 ATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAAAAGTTTCTC 29738 || ||| | ||| || |||||| || || | ||| || || ||||||| | | Sbjct 39693 ATTAGTGCTGGATGGGATAAGATTCAAGTCGTAGATTACAGCGAAGCCCAAAAGTATATG 39752 Query 29739 GATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGGGC 29798 || | || ||||||||||| ||||| || ||||| || ||||| ||| | | || Sbjct 39753 GACCACATCTTCCTCATGAGTTACGACTTCAAAGGTGCCTGGTCCAACGACACCCTCGGT 39812 Query 29799 TACCAAACTACTCTCTACGCGCCGAGTTGGAA-CCCAAACGAACTGTACAACACGGACCA 29857 | || ||| | || || || || ||||| |||||| |||| || | ||| || Sbjct 39813 CATCAGACTCCCCTATATGCCCCTGCATGGAATCCCAAAGAAACT-TATACCACTGATTT 39871 Query 29858 CGCCGTTAAGTTGCTCACGAAC-CAGGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCG 29916 | ||||| | | || | || || ||| |||| || ||| | || || || | Sbjct 39872 TGGTGTTAA-ATATTTACTTGCTCAAGGTGTGAACCCTAAGAAGATTGTGGTAGGTGTAG 39930 Query 29917 CCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACAACTATTTTACGG 29976 | |||||||| ||||| ||||| || || |||||||| ||| |||| || || | Sbjct 39931 CTATGTACGGACGCGGCTGGACTGGTGTACACGGTTATGAAGGTAACAATCCATTCACTG 39990 Query 29977 GCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGTCGACTATCGCCAAA 30036 ||| || | || || || | || || ||| | || || ||||| || || | ||| Sbjct 39991 GCAACGCCACAGGACCAGTAAAAGGTACATGGCAGGATGGTGTTGTTGATTACAGGGAAA 40050 Query 30037 TTGAAAACGAAAT 30049 | | ||| ||||| Sbjct 40051 TAGCAAATGAAAT 40063 >seq20129 Length=608 Score = 199 bits (220), Expect = 3e-46 Identities = 208/273 (76%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 103798 CATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAA 103857 |||||||||||||| |||||| |||| ||||||||| || | | | | || || || Sbjct 1 CATGCCCGGCCCCGTGCACCCCCGGTACGCCTCCGAAGCGGCGCGTCTTCGCACCTTCAA 60 Query 103858 GGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTA 103917 || ||||| ||| || |||| || ||||| || | |||| |||||||| |||| ||| Sbjct 61 AGACTGGCCGCGGTGTATGAAGCAAAAACCCGAAGAATTGGCGGAAGCCGGTTTCTTCTA 120 Query 103918 CACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGA 103977 |||||||||| | ||||| |||||||||||||||||||||||||| || || || ||||| Sbjct 121 CACCGGCCACGGAGACAAAACGAAATGCTTCTACTGCGACGGTGGCCTGAAAGACTGGGA 180 Query 103978 GCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCT 104037 | |||| || | || ||| | || ||||||| | || | | ||||| ||||| | Sbjct 181 GAACGACGACGTCCCATGGGAGCAGCACGCGCGCTGGTTCGACAGATGCGCTTACGTTCA 240 Query 104038 ACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 ||| || ||||||| ||| || || ||||| || Sbjct 241 ACTGGTAAAGGGCCGCGACTACGTTCAAAAAGT 273 >seq26923 Length=415599 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 103567 CAACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGA 103626 |||||| |||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 192578 CAACGGCTTCTATTACCTCGGCCGTGGCGACGAAGTTCGTTGCGCCTTTTGTAAAGTCGA 192637 Query 103627 GATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCA 103686 || |||||||||| |||||||||||||| || || || ||| | ||||| || || Sbjct 192638 AATCATGCGCTGGGTCGAGGGCGACGACCCTGCGAAAGACCACCAGCGTTGGGCCCCACA 192697 Query 103687 GTGTCCGTT 103695 |||||||| Sbjct 192698 ATGTCCGTT 192706 >seq27267 Length=86652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| ||||| |||||||| | | ||||| |||||||||||||||| Sbjct 6884 CACGGCTTCCACGTGCACGAATTCGGCGACAATACAAACGGGTGCACGTCCGCCGGCGCT 6943 Query 105147 CACTTCAACCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGGC 105206 ||||||||||| | || | ||||| || || |||| | | | ||||| ||| Sbjct 6944 CACTTCAACCCCAACAAGCAGGAGCACGGTGCACCCACCGCCACCGTGCGCCACGTTGGC 7003 Query 105207 GACCTGGGCAA 105217 ||||| ||||| Sbjct 7004 GACCTCGGCAA 7014 >seq21507 Length=372 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| ||||| || | || ||||| ||||| || | || ||| | Sbjct 19 AAGATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACCATCACTCTAGAGGTTGAGCCC 78 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | || ||| || || || || || || | ||| ||| Sbjct 79 TCCGATACCATCGAAAATGTGAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGAT 138 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| || | || | ||||||||||||||| || |||| | ||| | | |||||| Sbjct 139 CAGCAAAGGTTAATCTTTGCGGGTAAACAGCTAGAAGACGGCCGCACACTCTCAGACTAC 198 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || |||||||| | ||| ||||| | |||||||| || || Sbjct 199 AATATCCAGAAAGAGTCTACCCTCCACCTGGTGCTCAGATTGCGCGGTGG 248 >seq27463 Length=372575 Score = 82.4 bits (90), Expect = 6e-11 Identities = 165/243 (68%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 107549 GTTTAA-AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 |||||| |||||| || || || ||||| | || || |||||||| || | || | Sbjct 145873 GTTTAACAATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTG 145814 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 | || || ||| ||| | |||||| || ||| || ||||| ||| | || Sbjct 145813 AAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCAC 145754 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATG 107723 |||||||| ||| | || | || || |||||| |||| |||||| || || Sbjct 145753 CAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGC----ACTTTG 145698 Query 107724 GCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||||||||||| || ||||| || || | ||| |||| ||||| | ||||| || Sbjct 145697 TCGGACTACAACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGGAGGT 145638 Query 107784 AAT 107786 ||| Sbjct 145637 AAT 145635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398582836523830