Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq55175 199 3e-46 seq33159 163 2e-35 seq27463 161 8e-35 seq20129 150 1e-31 seq33871 138 9e-28 seq18898 138 9e-28 seq32636 113 3e-20 seq410 107 1e-18 seq21507 104 2e-17 seq16804 82.4 6e-11 >seq55175 Length=171662 Score = 199 bits (220), Expect = 3e-46 Identities = 638/979 (65%), Gaps = 23/979 (2%) Strand=Plus/Plus Query 45099 CAAAACTGTCGCCGCTTATTTCGTTGAATGGGGAGTGTATGGGCGCAATTTTCCTATGAA 45158 |||| ||| | ||||| ||||| |||||||| || || || || || || | | Sbjct 39077 CAAAGTTGTTGGAGCTTACTTCGTGGAATGGGGTGTTTACCCACGAAAATTCCCAGTCGA 39136 Query 45159 CCGCGTGCCAGTGCCGAACCTTACGCATTTGTTATACGGTTTTATTCCTATATGCGGTGG 45218 || | ||| | || || || || ||| | || || ||||||||||| || || || || Sbjct 39137 TCGTATACCAATTCCTAATCTGACTCATCTTTTGTATGGTTTTATTCCAATTTGTGGAGG 39196 Query 45219 CGATGGCATTAATGACAGTCTTAAAACGATTACAGGCAGTTTTGAAGCGTTGCAAAAATC 45278 ||||||||| ||||||||| | || || |||||||||| |||| | || || Sbjct 39197 CGATGGCATCAATGACAGTTTAAAGGAAATCGAAGGCAGTTTTCAAGCTCTTCAGCGTTC 39256 Query 45279 GTGCGCCGGCCGCTCAGATTTCAAAGTGAGCATTCACGACCCATGGGCCGCTGTGCAAAA 45338 ||| ||||| ||||||||| || ||||||||| || ||||| ||| | ||||| Sbjct 39257 ATGCAGTGGCCGTGAAGATTTCAAGGTTTCCATTCACGATCCTTGGGCTGCTCTTCAAAA 39316 Query 45339 ACCACAAAAAGGCGTTTCTGCTTGGAACGAACCGTATAAAGGCAATTTTGGACAAATCAT 45398 ||||| || ||| | ||| ||||||| ||||| || |||||||||||||| || | || Sbjct 39317 GCCACAGAAGGGCTTGTCTTCTTGGAATGAACCTTACAAAGGCAATTTTGGTCAGCTGAT 39376 Query 45399 GGCTGTAAAACGGGCAAATCCTCATTTAAAAGTGTTGCCATCGATTGGCGGCTGGACGCT 45458 | | | |||| || | || | | ||| | | || || ||||| |||||||| || Sbjct 39377 GTCCCTTAAACAAGCTAGGCCGGACCTTAAAATCCTACCTTCCATTGGGGGCTGGACTCT 39436 Query 45459 GTCCGATCCGTTTTACCATTTGCAC-GATGCGGAGAAACG----CGCTTTGTTTGTGGAA 45513 | ||||| ||| | ||| ||| || | ||| || ||||| ||| || Sbjct 39437 TGCTGATCC-TTTCTTCTTTTTCACTGACAAAGTGAAGCGGGACCGCTTCGTT----GAT 39491 Query 45514 TCCGTGCGCGAATT--TTTAACTACGTGGAAATTTTTTGACGGAGTCGATATAGATTGGG 45571 || ||| || || || || || ||||| || || || || || || || ||||||| Sbjct 39492 TCTGTGAAAGATTTCCTTCAA--ACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGG 39549 Query 45572 AGTTTCCCGGCGGCAATGGCGCCAATCCATCGGTGGGCGATCCAGAACGCGACGGTCTCA 45631 | || || ||||| || || || || || | || | || ||| || || Sbjct 39550 AATTCCCTGGCGGTAAGGGAGCTAACCCCGACCTTGG-TAGCCCGAA--AGATGGAGAAG 39606 Query 45632 CTTATGTAGCACTGCTGCGCGATTTGCGCGACATGCT---CGATCAATTGGCGCACGAAA 45688 |||||| | ||| || || |||||||| ||| | ||| | || || | |||| Sbjct 39607 TTTATGTTGAACTAATGAAGGAGTTGCGCGAAATGTTAAACGAGC--TTTCCG-AAGAAA 39663 Query 45689 CCGGTCGGCGCTACGAACTGACTACGGCTATAAGCGCCGGTGACGACAAAATCGCTTTGG 45748 | ||| | ||||| || || | ||||| || || || || || || | | Sbjct 39664 CGGGTAAGAAATACGAGCTCACCTCAGCTATTAGTGCTGGATGGGATAAGATTCAAGTCG 39723 Query 45749 TAGATTATCAAGACGCGCAAACTTATCTCGATCGAATCTTTTTAATGACGTATGATTTTA 45808 ||||||| || || |||| ||| | || | ||||| | |||| || || || | Sbjct 39724 TAGATTACAGCGAAGCCCAAAAGTATATGGACCACATCTTCCTCATGAGTTACGACTTCA 39783 Query 45809 AAGGCGCTTGGTCGAACTCGGATTTGGGCCATCAAACGGCCGTGTACGCGCCAGAATGGA 45868 |||| || ||||| ||| | || ||||| || || | || || || | ||||| Sbjct 39784 AAGGTGCCTGGTCCAACGACACCCTCGGTCATCAGACTCCCCTATATGCCCCTGCATGGA 39843 Query 45869 ATCGCGACGAGCGTTACACAGTCGACTACGCGGTGCACGTTTTGCTCGAAAAACGGGTAA 45928 ||| | | || ||| || || | | || | ||| || | || | || | Sbjct 39844 ATCCCAAAGAAACTTATACCACTGATTTTGGTGTTAAATATTTACTTGCTCAAGGTGTGA 39903 Query 45929 AGCCTCAAAAAATCGTGCTCGGCGTGGCAATGTACGGTCGCGGCTGGACCGGAGTAATTA 45988 | ||| | || || ||| | || || || |||||||| ||||||||||| || ||| Sbjct 39904 ACCCTAAGAAGATTGTGGTAGGTGTAGCTATGTACGGACGCGGCTGGACTGGTGTACACG 39963 Query 45989 ACTATCAAGACGACAACCCGTTTACCGGCATCGCAACCGGGCCCGTGTCCGGCACTTGGG 46048 ||| ||| |||| || || || |||| ||| || || || || || || ||| Sbjct 39964 GTTATGAAGGTAACAATCCATTCACTGGCAACGCCACAGGACCAGTAAAAGGTACATGGC 40023 Query 46049 AAGACGGTGTGATCGATTA 46067 | || ||||| | ||||| Sbjct 40024 AGGATGGTGTTGTTGATTA 40042 >seq33159 Length=163697 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||||||| |||||||| ||||| || |||||||||||||| || || || | | Sbjct 97474 CCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAA 97415 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || || || ||| | || | | ||||||||| || ||| Sbjct 97414 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 97355 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||||| ||| ||| | || | ||||| || |||| || Sbjct 97354 ATGCCTTCCTTATCTTG-AATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCAC 97296 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || ||||| || || |||| ||||||||||| ||||||||| Sbjct 97295 CTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCATT 97247 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || || || || || || ||||| || || | | ||||| Sbjct 97919 ACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGTCC 97860 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | ||||| || ||||| || || ||||||||||| || Sbjct 97859 ATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTT 97800 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | || ||| |||| | ||| |||||| | || ||||| | || | Sbjct 97799 GTCTTG-AATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTGA 97741 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | ||||| ||||| |||||||| Sbjct 97740 TGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || || || || || ||||| || || | | ||||| Sbjct 98147 ACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCC 98088 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | ||||| || ||||| || || ||||| || || || Sbjct 98087 ATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 98028 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||| ||| | || | ||||| || | || ||||| ||||| || Sbjct 98027 GTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACTTCCAGAGTGAT 97968 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| |||||||| || || |||||||| Sbjct 97967 GGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 >seq27463 Length=372575 Score = 161 bits (178), Expect = 8e-35 Identities = 168/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || ||||| || || ||||| || |||| | ||||| ||| || Sbjct 145657 ACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCC 145716 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||||| || | ||||||||||||||||| || ||||| |||||||||||||| Sbjct 145717 AACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTCTTG- 145775 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | ||| ||| |||| | ||||||||| ||| || || | ||||| ||||| Sbjct 145776 AATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTT 145835 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 || || | ||||||||| || ||||||||| | |||| Sbjct 145836 ACCCGTGAGGGTTTTAACGAAGATCTGCATTGTTAAAC 145873 >seq20129 Length=608 Score = 150 bits (166), Expect = 1e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 89745 TGAAACAAAAACCTGAGCAGTTGGCGGATGCCGGttttttttACACGGGCCAAGGCGACA 89804 |||| |||||||| || | |||||||| |||||||| || ||||| ||||| || |||| Sbjct 78 TGAAGCAAAAACCCGAAGAATTGGCGGAAGCCGGTTTCTTCTACACCGGCCACGGAGACA 137 Query 89805 AGACGATTTGTTTCTTTTGCAACGGGGGCCTTAAGGATTGGGAAGATGGCGATGAACCTT 89864 | |||| || |||| ||| |||| ||||| || || ||||| | | ||| | || | Sbjct 138 AAACGAAATGCTTCTACTGCGACGGTGGCCTGAAAGACTGGGAGAACGACGACGTCCCAT 197 Query 89865 GGGAACAACATGCGCGCTGGTTTGATAATTGCATCTATGTTCAACTAGTAAAAGGACGCG 89924 |||| || || ||||||||||| || | ||| || |||||||| ||||| || |||| Sbjct 198 GGGAGCAGCACGCGCGCTGGTTCGACAGATGCGCTTACGTTCAACTGGTAAAGGGCCGCG 257 Query 89925 ATTACGTGCAAAATGTTATTTCGAACGCTTGCG 89957 | ||||| ||||| || || ||| | || |||| Sbjct 258 ACTACGTTCAAAAAGTGATGTCGGAGGCCTGCG 290 >seq33871 Length=3159 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || || || || || ||||| || || | | ||||| Sbjct 2910 ACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCC 2969 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | ||||| || ||||| || || ||||| || || || Sbjct 2970 ATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 3029 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||||||| | || | ||||| ||| |||| ||||| | || || Sbjct 3030 GTCCTGGATTTTAGCTTTGACATTCTCAATGGTGTCTGAAGGTTCCACTTCCAAGGTGAT 3089 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||||| ||||||||| || |||||||| Sbjct 3090 GGTTTTGCCAGTTAGGGTTTTAACGAAGATCTGCAT 3125 >seq18898 Length=402 Score = 138 bits (152), Expect = 9e-28 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || ||||| || || || || || || | || |||||| Sbjct 88 ACGTAGCACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACC 147 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| |||||| | ||||| || || ||||||||||| || Sbjct 148 ATCTTCCAGCTGCTTGCCAGCGAATATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTT 207 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | ||||||||| |||||| || || || || Sbjct 208 GTCTTGGATCTTAGCCTTCACATTTTCGATAGTGTCAGAGGCTTCTACCTCGAGGGTGAT 267 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || |||| ||| || ||||| || |||||||| Sbjct 268 TGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCATTTT 306 >seq32636 Length=346 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | || || ||||| || || || |||||||| || | | ||||||| Sbjct 311 ACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGCGACC 252 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||||||||| | |||| | ||||| || || ||||| || || || Sbjct 251 ATCTTCCAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGAATGCCTTCCTT 192 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||| | || | ||||| ||| | || ||||| | || || Sbjct 191 GTCCTGGATCTTCGCCTTTACATTCTCAATGGTGTCCGAAGGCTCCACTTCCAAGGTGAT 132 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| ||||| | ||| || || || || |||||| Sbjct 131 GGTTTTACCAGTGAGGGTCTTCACGAAGATTTGCATT 95 >seq410 Length=311 Score = 107 bits (118), Expect = 1e-18 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29663 TTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACA 29721 |||||||||| || ||||| |||||||||||||| |||||| | ||| | | |||| | | Sbjct 1 TTTGCTGATCTGGTGGAATGCCCTCTTTGTCTTG-AATTTTCGCTTTTAAATTTTCGATA 59 Query 29722 GTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATC 29781 |||||||| ||| || || | ||||| ||||| || || | ||||||||| || ||| Sbjct 60 GTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATC 119 Query 29782 TGCATTTTAAAAC 29794 |||||| | |||| Sbjct 120 TGCATTGTTAAAC 132 >seq21507 Length=372 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| || || || || ||||| || || || || || | | ||||| || Sbjct 233 AGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGGCCGTCT 174 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| || ||| | || || ||||||||||| || || || ||||| |||||| Sbjct 173 TCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGGGGGATTCCCTCCTTGTCT 114 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||| ||| |||| | || || || | || || || ||||| || || Sbjct 113 TGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCAACCTCTAGAGTGATGGTC 54 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || | ||| || || || |||||||| || Sbjct 53 TTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 19 >seq16804 Length=240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| ||||| | || | || || || || || ||||||||||| ||||| Sbjct 238 TCCAGCTGTTTACCAGCGAAGATGAGTCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 179 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || ||| |||| | || ||||| | |||||||| | ||| || || Sbjct 178 TGGATCTTAGCCTTCACATTTTCAATGGTATCAGATGGCTCTACTTCCAAAGTGATGGTC 119 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| | || || ||||| ||||||||| Sbjct 118 TTGCCAGTAAGAGTCTTCACAAAGATCTGCATT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384935301876270