Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq55175 210 2e-49 seq33159 136 4e-27 >seq55175 Length=171662 Score = 210 bits (232), Expect = 2e-49 Identities = 781/1207 (65%), Gaps = 34/1207 (3%) Strand=Plus/Minus Query 18339 TTGATAGCATTTAAAAGGTCGCCATTGTCCGCGTCGATCTCCCACGCAAACACTCCCGCC 18398 || ||||| ||||| || ||||||||||| || |||||||||||||| || | || || Sbjct 40264 TTCATAGCGTTTAACAGTTCGCCATTGTCTGCATCGATCTCCCACGCGAATAGACCGCCC 40205 Query 18399 AACTCGTGGTCTAACACGTATTTTGTTTTATCGGCGACTGATTTTGGATCGTCGTACGAC 18458 | | | || | ||| || || ||| || ||| |||| |||||||| Sbjct 40204 AGTTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGCGGATTGTCGTACGTT 40145 Query 18459 ACAAGATTGCCGTCCGATTTGCGATACGCGAATGCCGCTTTGGCCACTTCGTCGTAAGTG 18518 | || | ||| |||| | || | ||| |||| || || | ||||||| | Sbjct 40144 ATTAGGTCACCGGTCGATGGCCTGAACACATATGGGGCTTCTGCAACGTTGTCGTAATGG 40085 Query 18519 TAATCGTATGAGGTCA----AATTG--TGCACAATCTGTCGGTAATCGACCACACCGTTT 18572 | || || | || |||| | | || | | |||||| || ||||| | Sbjct 40084 AACTCCCATTTGCCCATAGCAATTTCATTTGCTATTTCCCTGTAATCAACAACACCATCC 40025 Query 18573 TCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAATGGATTATCACTATCG--- 18629 | ||| || || || || || ||||| |||| | ||||||||| | || || Sbjct 40024 TGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAATGGATTGTTACCTTCATAA 39965 Query 18630 CTCTTTACCCCAGTCCAACCGCGCCCGTACATTGCTACACCCAGTGCAATTTTGCTTGTC 18689 | | ||| |||||||| ||||| |||||||| |||||||| | |||| || ||| Sbjct 39964 CCGTGTACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTACCACAATCTT-CTTAGG 39906 Query 18690 GGT-ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCCGCGCAATAAGGTTCGTCGGG 18748 | | || ||| ||||| || | || || ||| | | ||||| ||| | ||| Sbjct 39905 GTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGGTATAAGTTTCTTTGGG 39846 Query 18749 TTTCCATGCAGGTGCAAACAAAGCGGTTTGATGTCCTAAATCCGTCATAG-ACCAGGCTC 18807 ||||||||||| ||| | | | || ||||| || | ||| | | ||||||| | Sbjct 39845 ATTCCATGCAGGGGCATATAGGGGAGTCTGATGACCGAGGGT-GTCGTTGGACCAGGCAC 39787 Query 18808 CTTTAAAATCGTACGACATTAAAAATATGGTGTCGAGGTATTTTTGCGCTTCAGTGTAAT 18867 |||| || ||||| ||| | || ||| ||| | || ||||| ||||| |||||| Sbjct 39786 CTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTTGGGCTTCGCTGTAAT 39727 Query 18868 CGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACTCGTCAAC----ATATAGTAA 18923 | || || ||||||||| || || || || || || | | || | || Sbjct 39726 CTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGAGCTCGTATTTCTTAC 39667 Query 18924 CGATTGTGATGTACGCCTAGGGCGTCGAGCATGCCGCGAAGTTCACGCAGCAGG--ATCG 18981 | || | | || || ||| | ||| |||| | || || || | | Sbjct 39666 CCGTT----TCTTCGGAAAGCTCGTTTAACATTTCGCGCAACTCCTTCATTAGTTCAACA 39611 Query 18982 TGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGGGTTAGCGCCATTGCCGCCTG 19041 | || | || ||| ||||| | || | || ||||||||| || || ||||| | Sbjct 39610 TAAACTTCTCC--ATCT--TTCGGGCTA-CCAAGGTCGGGGTTAGCTCCCTTACCGCCAG 39556 Query 19042 GAAACTCCCAATCAATATCGACGCCATCGAAGAATTTCCACGTTTCTAGATACTCTTGGA 19101 | || |||||||| || || || ||||||||||| ||||| |||| || | |||| | Sbjct 39555 GGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTGAAGGAAATCTTTCA 39496 Query 19102 CTGAATCGATAAACGTCTGCCGTACGATCTTGTC-GTGCATATGGTAAAATGGGTCCGAA 19160 | ||||| | || | ||| | ||||| ||| | | | ||| || || | | Sbjct 39495 CAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGAAGAAA-GGATCAGCA 39437 Query 19161 AGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATGAGGGTTCGCCAATTTGGCTGCC 19220 || ||||||||||| || |||||||| | ||| || | || | || ||| | | Sbjct 39436 AGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGCTTGTTTAAGGGAC 39377 Query 19221 ATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCGCTGACA--CCTTTTTGGG 19278 || || || ||||| ||||||||||| ||||| ||||| | |||| || || || | Sbjct 39376 ATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAA--GACAAGCCCTTCTGTG 39319 Query 19279 GTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTTGAAGTCGGCACGACCGGCAC 19338 | || || | || ||||||||||||||||||| || ||||| || |||| || | Sbjct 39318 GCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTCACGGCCACTGC 39259 Query 19339 ACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTTGAGGGCATCATTGATGCCGT 19398 | ||||| || | |||| |||||||| || || | ||||||||||| | Sbjct 39258 ATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTCATTGATGCCAT 39199 Query 19399 CGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGACAAGTTCGGTGTGGGCACTT 19458 |||| || || || || | ||||| ||||| | ||| | || || || | || | Sbjct 39198 CGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGGAATTGGTATAC 39139 Query 19459 TATCGACGGGAAACTGTCGCGGATACACACCCCATTCGACAAAGTATGCACCTATAATCT 19518 |||||| || || | ||| || || ||||||||||| || ||||| || || | || | Sbjct 39138 GATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGCTCCAACAACTT 39079 Query 19519 TGTCCGA 19525 || |||| Sbjct 39078 TGCCCGA 39072 >seq33159 Length=163697 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||||| ||||| | || || |||| ||||||||||||||| || ||||| ||| Sbjct 97475 GCCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGA 97416 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| |||||||| || ||||| ||| |||| |||||||||||||| || || Sbjct 97415 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 97356 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| || || ||||||| ||| | | || | ||||||| ||||| || Sbjct 97355 AATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCAC 97296 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | |||||| || || || ||||| Sbjct 97295 CTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCAT 97248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| ||||| || || || |||||||| || Sbjct 98158 CCGCCACGAAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAG 98099 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || | ||||| || || || || || |||||| | ||||| || || || Sbjct 98098 AGTGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 98040 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| ||||| ||| | | || | ||||| | ||| || || Sbjct 98039 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGAC 97980 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || || || ||||| ||||||||||| || |||||| Sbjct 97979 TTCCAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAGATCTGCATA 97931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488174721804000