Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq33159 187 5e-42 seq36087 161 2e-34 seq21507 158 2e-33 seq16804 140 6e-28 seq27463 138 2e-27 >seq33159 Length=163697 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||| || || ||||| || ||||||||||| || ||||| || || || Sbjct 97474 CCTCCTCTCAAACGGAGCACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAA 97415 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || || |||||||| || | ||| |||||||| || Sbjct 97414 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 97355 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||||||||| |||||||| ||||| ||||| || || ||||| || Sbjct 97354 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCTGATGGTTCCACC 97295 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| ||||| | || || ||||| ||||||||| Sbjct 97294 TCTAATGTGATAGTCTTCCCTGTTAGTGTTTTAACAAAAATCTGCATT 97247 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| ||||| || |||||||| ||||||||||| ||||| ||||| || || || Sbjct 97246 CCTCCTCTTAAACGGAGGACTAAGTGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAC 97187 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || | ||||| || |||||||| | || || || ||||| || Sbjct 97186 AATGTACGTCCATCCTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 97127 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| ||||| || || ||||||||||| || || ||||| ||| Sbjct 97126 ATGCCTTCCTTATCTTGGATCTTCGCCTTAACATTTTCAATTGTGTCGGAGGGTTCAACT 97067 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || ||||| || || || || |||||||| Sbjct 97066 TCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACGAAAATCTGCAT 97020 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || ||||| || ||||| || ||||| || || || |||| Sbjct 97020 TACCTCCACGTAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAG 96961 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || || ||||| || || ||||| | || || || ||||| | Sbjct 96960 AGAGTGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 96901 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| ||||| ||||||||||| || || ||| || | Sbjct 96900 GAATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTTTCAATTGTGTCCGAAGGCTCCA 96841 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 96840 CCTCCAAGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 96792 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || ||||| || ||||| || || || || | Sbjct 97932 TACCACCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 97873 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || |||||||| || || || || ||||| | || || || ||||| | Sbjct 97872 AGAGTGTGCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 97813 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| |||||||| || || || ||||||||||| |||||| ||| || | Sbjct 97812 GAATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAA 97753 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || |||| || |||||||| |||||||| Sbjct 97752 CTTCCAATGTGATGGTTTTACCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || ||||| || || || || || ||||| || ||||| || | Sbjct 97704 TACCACCACGCAGACGGAGTACTAAATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTG 97645 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||||| || || ||||||||||| | | ||| || ||||| | Sbjct 97644 AGAGTGTGCGTCCATCTTCTAACTGCTTGCCAGCAAAGATCAACCGTTGCTGGTCTGGGG 97585 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || || || || || ||||| || || ||||| |||||| | Sbjct 97584 GAATACCTTCCTTATCCTGGATTTTAGCCTTGACATTCTCGATGGTATCCGAAGGTTCAA 97525 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 97524 CTTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATTTGCAT 97476 >seq36087 Length=321 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || | || |||||| |||||||| || || ||||| ||||| || |||| Sbjct 227 TACCACCTCGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAG 168 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || || ||||| ||||| ||||| |||| || || || || | Sbjct 167 AGAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGG 108 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| || || || || ||||||||||| || ||| || || | Sbjct 107 GGATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCA 48 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||||||| || || |||||||| || | ||| || ||||| |||||| Sbjct 47 CTTCCAACGTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 >seq21507 Length=372 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| || ||||| |||||||| ||||| || || || || | | |||||| Sbjct 233 AGCACCAGGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGGCCGTCT 174 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 ||||| ||||| || |||||||||| ||||| |||||||| || ||||| ||||| ||| Sbjct 173 TCTAGCTGTTTACCCGCAAAGATTAACCTTTGCTGATCTGGGGGGATTCCCTCCTTGTCT 114 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| |||||||| || ||||| || || || || | ||| || ||| Sbjct 113 TGGATTTTGGCTTTCACATTTTCGATGGTATCGGAGGGCTCAACCTCTAGAGTGATGGTC 54 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | ||||| || || |||||||| Sbjct 53 TTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22 >seq16804 Length=240 Score = 140 bits (154), Expect = 6e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || ||||| ||||| ||||| |||| ||||| ||||| || || || ||||| || Sbjct 238 TCCAGCTGTTTACCAGCGAAGATGAGTCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 179 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||||||||| |||||| || |||||||||||||| || ||| Sbjct 178 TGGATCTTAGCCTTCACATTTTCAATGGTATCAGATGGCTCTACTTCCAAAGTGATGGTC 119 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| || | ||||| ||||| ||||||||||| Sbjct 118 TTGCCAGTAAGAGTCTTCACAAAGATCTGCATTAT 84 >seq27463 Length=372575 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | | || ||| ||||| || || ||||| ||||| || || || || | Sbjct 145637 TACCTCCTCGAAGCCTCAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCG 145696 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || ||||| | ||||| || || ||||| | |||||| |||||||| | Sbjct 145697 ACAAAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 145756 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || |||||||| || |||||||||||||| || || ||| | ||| | Sbjct 145757 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAA 145816 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 | || || ||||| || || || || | || || || || ||||||||| ||| Sbjct 145817 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTAACGAAGATCTGCATTGTTA 145870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981066507899330