Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq34861 257 4e-63 seq49859 98.7 2e-15 >seq34861 Length=230841 Score = 257 bits (284), Expect = 4e-63 Identities = 452/650 (70%), Gaps = 9/650 (1%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||||| |||||||||| || ||| ||| || |||||| ||||||||||| ||||| Sbjct 61993 CAATTATCTTCTTGCTTCCTCATAGCAATGAAAGATGATAGCATTGAAGGTATATATGAC 61934 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | | ||| || ||| | ||||| ||| |||| || ||||| | || |||||| Sbjct 61933 ACATTAAAACAATGTGCATTAATTTCCAAATCAGCTGGTGGTATTGGAGTACATGTTCAT 61874 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 ||| | |||||||| | | || || | || || | ||| | ||| ||||| Sbjct 61873 TGTATCAGATCAAAAGGTACCTACATAGCTGGTACTAACGGAGTTTCCAATGGTCTTGTA 61814 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GA 110747 |||||||| ||||| | ||| | || || | ||||| | ||||| || || | || Sbjct 61813 CCAATGTTGAGAGTGTACAATAATACAGCTAGGTATGTTGACCAAGGAGGCAATAAACGA 61754 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || | || || || || | |||||||||||||| ||| | ||||| || ||||| Sbjct 61753 CCAGGGGCTTTCGCAATTTACTTAGAACCTTGGCATTCTGATGTTTTTGAGTTTTTAGAT 61694 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 || || ||| || ||||| ||||||| | || ||||||||||| | ||| Sbjct 61693 CTGAAAAAGAATACTGGTAAAGAAGAGGTAAGAGCAAGAGAATTATTTTATGCTTTATGG 61634 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCT 110927 ||| | |||||||| ||||| |||||| || || ||| |||||| | | ||||| ||| Sbjct 61633 ATTCCTGATTTATTTATGAACCGTGTTGAAAAAGATGAAATGTGGAGTTTAATGTGCCCT 61574 Query 110928 CATCGTTCTCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTT-TACGAAA 110985 || || |||||||| | || ||| | ||| |||| |||||| || || || |||| Sbjct 61573 CACGATTGCCCTGGTCTTGCCGACTGT-TGGGGAGAAGAATTTGAA-ACATTATATGAAA 61516 Query 110986 AATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 |||| ||| | ||| | ||| || ||| ||| |||||||||||| ||| || Sbjct 61515 AATACGAACAGGAAAAGAGGTTCGTTAAGCAAGTTCGAGCTCAAGAACTGTGGAAGGCAA 61456 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAAT 111104 | | || ||||||| ||||| || || || || || |||| |||||| ||| | ||| Sbjct 61455 TAATAGAGGCACAAGTCGAAACAGGCACACCATACATGCTGTACAAAGATTCATGT-AAT 61397 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 | ||| |||||||| ||| | || || ||||| | ||||||||||| Sbjct 61396 AGAAAAAGTAATCAAAAAAATCTTGGCACCATTAAATGCAGTAATTTGTG 61347 >seq49859 Length=327338 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| | || | |||| |||| | ||||| | || || |||| || || ||| Sbjct 70168 GACATTTAAGAGATGACGATTTGGTTATATTCAACCGACAGCCTACACTTCACAAGATGA 70227 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| ||| | ||| ||||| | || | | ||||| || | ||| ||||| Sbjct 70228 GTATGATGGGTCACAGAGTAAAAGTGCTCCCTTGGTCTACATTCCGTATGAATTTAAGT- 70286 Query 305427 CTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 ||||| ||||| ||||| |||||||| ||||||||||||||| | ||||| || | Sbjct 70287 --TGTACATCTCCTTACAATGCTGATTTTGACGGAGATGAAATGAATTTACATGTTCCAC 70344 Query 305484 AATC 305487 |||| Sbjct 70345 AATC 70348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185893290821670