Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq34861 141 9e-29 seq55175 136 4e-27 seq27267 122 8e-23 seq33159 107 2e-18 seq27463 91.5 1e-13 seq32636 89.7 5e-13 seq10121 87.8 2e-12 seq36087 84.2 2e-11 >seq34861 Length=230841 Score = 141 bits (156), Expect = 9e-29 Identities = 692/1087 (64%), Gaps = 33/1087 (3%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 |||| ||||| || || | || ||||||||| ||||||| |||||||| ||||||| Sbjct 60376 CAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAATACATTCCCGTTT 60435 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 | || || | ||| | | | ||||||||| |||| || | || |||| || | Sbjct 60436 TCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCATAATTCGGTTCAG 60495 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 |||| || ||||| ||||| ||||||||||| || || | ||| || ||||| | Sbjct 60496 CCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTGTCAGCAGCCATTT 60555 Query 146729 CAATCATGCGTTTTGTC-TTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATC- 146786 ||| | ||||| | ||||||||| | ||||| |||| ||| |||| Sbjct 60556 TAATTGT-TGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGTCTAA---TATCC 60611 Query 146787 --TGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-AT 146843 |||||| | ||||| ||||||||||| || |||| || || || ||| | || Sbjct 60612 TTTGGAATCCGCTCAATATTTTGAATAGAACCATTGTTATGAATTAT-CTGATTCTTCAT 60670 Query 146844 TTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTG 146903 || | || | | | | | ||| | |||| || || || ||||| Sbjct 60671 GTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTTACAACTTG 60730 Query 146904 AAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTC 146963 ||| || || | | |||||||| | || | || || || || ||||| || || Sbjct 60731 AAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAATGATTC 60790 Query 146964 ATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATT 147023 |||||| || || ||||| || || | ||| || ||||| || | || | |||||| Sbjct 60791 ATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAATAAAAGTGAATT 60850 Query 147024 TCGCAGACCGTA---CGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGA 147080 || || || || ||| || || ||||| ||| ||||||||||| || | Sbjct 60851 GCGAAGTCCATATTTGGCA---ATTTTTTCCTTTAAAACAGTCCAGTCCCACA--GATCA 60905 Query 147081 G--GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCG 147138 | || || | |||||| || || || | | || | || || ||||| || | Sbjct 60906 GTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACTTCCTTCA 60965 Query 147139 AACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAG 147198 | ||| | || ||| | | ||| | ||| || || || || | ||||| ||| Sbjct 60966 TAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGCTCCGTAG 61025 Query 147199 TATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATA 147258 ||||| ||||| |||||||| ||| || | || ||||| || || || || || Sbjct 61026 TATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATATGGAATG 61085 Query 147259 CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG---- 147314 |||| ||| ||||| | |||||| ||||| || | || | || || |||| || Sbjct 61086 CGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCTGTGTCGC 61145 Query 147315 CTTTTCG-TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGT 147373 | || | | || |||| || || |||| |||| ||| |||||| || || | Sbjct 61146 ATGTTAGAATTCTTTGCTT----CTGGCACTGGG-TAGTAGTTAACATCAATGATTTTAT 61200 Query 147374 TGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGT 147433 | || || | || || || | | ||| | ||| |||| ||| || | Sbjct 61201 TTAGATTCTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATGTTTTAT 61260 Query 147434 CTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTT 147493 ||| || || || || | || || || |||| || ||||| || || | Sbjct 61261 CTT---CATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCAT 61317 Query 147494 CGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAAT 147553 | || | || | || ||||| | |||| || |||||||| ||| || | || Sbjct 61318 CTGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGAT 61377 Query 147554 TTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCT 147613 ||| ||||| ||||| | ||| || | |||||| | |||||||| ||| ||| || | Sbjct 61378 TTTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTT 61437 Query 147614 CGACTTG 147620 ||||||| Sbjct 61438 CGACTTG 61444 >seq55175 Length=171662 Score = 136 bits (150), Expect = 4e-27 Identities = 427/646 (66%), Gaps = 19/646 (3%) Strand=Plus/Plus Query 24680 TGAAGCTGTGCAACGTCGACGGTTGTTCGACGAGC-AGCGCGGTTAAAGTGATTGTTGCC 24738 |||| |||||||| | ||||| || |||||||| ||| | | ||| | | || || Sbjct 38942 TGAA-CTGTGCAATGCTGACGGATGCTCGACGAGTGAGCTCACTGAAATCG-TCGTAGCT 38999 Query 24739 GACACCGACGGTTCGCATCTTGCCCCGCTA--GTATACGACTTTCTCGAAAATAACAAGC 24796 || |||||||| ||||| | || || |||||| | || || || || |||| Sbjct 39000 GATACCGACGGCAGTCATCTACCTCCATTAATGTATAC--CCTTGGAGAGAAAAATAAGC 39057 Query 24797 G-TTTCGAGAAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGAGTGGGGCGTGTAT 24855 ||| | | || || | ||| |||| | ||||||||||| || ||||| || || Sbjct 39058 CATTTAAACAGACTTCGGGC-AAAGTTGTTGGAGCTTACTTCGTGGAATGGGGTGTTTAC 39116 Query 24856 CAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCACTTGCTATACGCT 24915 | || | || | ||||| | || || ||| || | || | | || | | Sbjct 39117 CCACGAAAATTCCCAGTCGATCGTATACCAATTCCTAATCTGACTCATCTTTTGTATGGT 39176 Query 24916 TTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAACAGTTCCCGGTAGT 24975 || | || || || || ||||| ||||| || ||| | | || | | || ||| Sbjct 39177 TTTATTCCAATTTGTGGAGGCGATGGCATCAATGACAGTTTAAAGGAAATCGAAGGCAGT 39236 Query 24976 TTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGGTAACCATTCACGAC 25035 ||| | || || ||||| || ||| || || || ||||| ||||| |||||||||| Sbjct 39237 TTTCAAGCTCTTCAGCGTTCATGCAGTGGCCGTGAAGATTTCAAGGTTTCCATTCACGAT 39296 Query 25036 CCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGAACGAGCCGTACAAA 25095 || ||||| || | || || || ||||| ||| | || ||||||| || || |||||| Sbjct 39297 CCTTGGGCTGCTCTTCAAAAGCCACAGAAGGGCTTGTCTTCTTGGAATGAACCTTACAAA 39356 Query 25096 GGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACTTGAAGGTGCTGGCG 25155 ||||| ||||| || | ||| ||| ||| ||||| || || | || | || | Sbjct 39357 GGCAATTTTGGTCAGCTGATGTCCCTTAAACAAGCTAGGCCGGACCTTAAAATCCTACCT 39416 Query 25156 TCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCTTTCACATGCA-TGAC---GCGACCG 25210 || || || |||||||| |||| | ||||| ||| ||| | || |||| | || Sbjct 39417 TCCATTGGGGGCTGGACTCTTG-CTGATCCTTTC-TTCTTTTTCACTGACAAAGTGA--- 39471 Query 25211 TGCGTCAAACGTTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAAGTTTTTCGACG 25270 ||| | ||| | ||||| || | || || || || |||||||| ||||| | Sbjct 39472 AGCGGGACCGCTTCGTTGATTCTGTGAAAGATTTCCTTCAAACCTGGAAGTTCTTCGATG 39531 Query 25271 GCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCC 25316 | || ||||| || ||||| || || ||||| || || || || || Sbjct 39532 GTGTTGACATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAACCC 39577 >seq27267 Length=86652 Score = 122 bits (134), Expect = 8e-23 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||||||| ||||| | |||||| |||||||||| | ||| | || || ||||| || Sbjct 7023 GCCTCGATGTTGCCGAGGTCGCCAACGTGGCGCACGGTGGCGGTGGGTGCACCGTGCTC- 6965 Query 51792 CTGCCGGT-GGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 51850 |||| || |||||||||||| |||| || |||||||| ||||| | |||||||||| Sbjct 6964 CTGCTTGTTGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTTGTATTGTCGCCGAA 6905 Query 51851 TTCGTGCACGTGGAATCCGTG 51871 ||||||||||||||| ||||| Sbjct 6904 TTCGTGCACGTGGAAGCCGTG 6884 >seq33159 Length=163697 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| ||||||||| | || || |||||||||||| ||||| | | Sbjct 97441 GATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCA 97382 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || |||||||| || |||||||| ||||| ||||||| ||| | Sbjct 97381 AAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACA 97322 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||||| || | || | || || || || || ||||| Sbjct 97321 TTCTCAATGGTGTCTGATGGTTCCACCTCTAATGTGATAGTCTTCCCTGTTAGTGTTTTA 97262 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 97261 ACAAAAATCTGCAT 97248 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| || || ||||||||||| | || || |||||| Sbjct 98140 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTGCGTCCATCTTCT 98081 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | | ||| || ||||| || |||||||| || || Sbjct 98080 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 98021 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | || | || || | ||||| ||||| | || | |||||| Sbjct 98020 ATTTTAGCTTTCACATTCTCAATGGTGTCCGAGGGCTCGACTTCCAGAGTGATGGTTTTA 97961 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||||| ||| |||||||| Sbjct 97960 CCAGTCAAGGTTTTTACGAAGATCTGCAT 97932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| | || || |||||| Sbjct 97912 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGTCCATCTTCT 97853 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | | ||| || ||||| || || || || || || | Sbjct 97852 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 97793 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | |||||| | ||||| ||||| | || | |||||| Sbjct 97792 ATTTTAGCCTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAATGTGATGGTTTTA 97733 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||||| || |||||||| Sbjct 97732 CCAGTCAGTGTTTTTACAAAGATCTGCAT 97704 >seq27463 Length=372575 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||||||||| || | |||| || || || ||||||||||| || || || ||| Sbjct 145653 CAAAACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATC 145712 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | |||||| |||| |||| | | || |||||||| || ||||| ||||| || Sbjct 145713 TTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTC 145772 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | ||| | ||| || | | || || || | ||| | || Sbjct 145773 TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 145832 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || || ||||| | ||| |||||||| Sbjct 145833 TTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 145865 >seq32636 Length=346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||| |||||| || ||| || |||||| || ||||| || | Sbjct 289 GACTCCTTCTGGATGTTATAGTCGGACAGGGTGCGACCATCTTCCAGTTGTTTGCCAGCG 230 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| |||||||| || || || || || | Sbjct 229 AAGATCAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTTACA 170 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||| | || | ||||||||||| || || || Sbjct 169 TTCTCAATGGTGTCCGAAGGCTCCACTTCCAAGGTGATGGTTTTACCAGTGAGGGTCTTC 110 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 109 ACGAAGATTTGCAT 96 >seq10121 Length=1170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 51799 TGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCA 51858 ||||||||||||| |||| || |||||||| ||||| || ||||||||||||| |||| Sbjct 1159 TGGGGTTGAAGTGAGCGCCGGCGGACGTGCACCCGTTCGTGTTGTCGCCGAATTCATGCA 1100 Query 51859 CGTGGAATCCGTG 51871 ||||||| ||||| Sbjct 1099 CGTGGAAGCCGTG 1087 >seq36087 Length=321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| | |||||| ||||| | | ||||| || || || |||||||| | || Sbjct 219 CGCAGTCTCAAAACTAAATGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTG 160 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| |||||||||||||| | |||| || ||||| || || || || ||||| Sbjct 159 CGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCC 100 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| |||| | ||| | ||| || | ||||||||||| | | Sbjct 99 TCCTTGTCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCAGATGGCTCCACTTCCAAC 40 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGC 132121 || | || || || || || ||||| | || |||||| Sbjct 39 GTGATGGTCTTGCCCGTAAGCGTTTTCACAAAGATCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476250941509200