Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq55175 331 8e-86 seq33159 111 1e-19 seq27463 104 2e-17 seq27267 95.1 1e-14 >seq55175 Length=171662 Score = 331 bits (366), Expect = 8e-86 Identities = 892/1348 (66%), Gaps = 41/1348 (3%) Strand=Plus/Plus Query 59786 AACTATGTAATTCGGACGGATGCACTTCGAGTCAGCCGGTCGATGTTGTCATTGCAGATA 59845 |||| || ||| | ||||||||| | ||||| ||| || | ||| | || |||| Sbjct 38944 AACTGTGCAATGCTGACGGATGCTCGACGAGTGAGCTCACTGAAATCGTCGTAGCTGATA 39003 Query 59846 CCGACGGCTCTCATCTCGCTCCGTTATATTATGAATATCA----AGAACTGAACCAGCCC 59901 |||||||| |||||| |||| ||| ||| ||| | ||| || |||| Sbjct 39004 CCGACGGCAGTCATCTACCTCCATTA----ATGTATACCCTTGGAGAGAAAAATAAGCCA 39059 Query 59902 TTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTAT 59961 || || || | || ||||| |||| || || || || |||||||||||||| Sbjct 39060 TTTAAACA--GACTTCGGGC-AAAGTTGTTGGAGCTTACTTCGTGGAATGGGGTGTTTAC 39116 Query 59962 CCTAGAAATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGA 60021 || |||| || || || ||||| | || | ||||||||| | ||| || | || || Sbjct 39117 CCACGAAAATTCCCAGTCGATCGTATACCAATTCCTAATCTGACTCATCTTTTGTATGGT 39176 Query 60022 TTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGT 60081 |||||||| || || || ||||| || ||||| |||||| | || || || ||| Sbjct 39177 TTTATTCCAATTTGTGGAGGCGATGGCATCAATGACAGTTTAAAGGAAATCGAAGGCAGT 39236 Query 60082 TTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGAT 60141 || |||| |||||||| || || || || || || || || || || ||||||||| Sbjct 39237 TTTCAAGCTCTTCAGCGTTCATGCAGTGGCCGTGAAGATTTCAAGGTTTCCATTCACGAT 39296 Query 60142 CCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAA 60201 || ||||| || | || || || || || | | ||||||| ||||| |||||| Sbjct 39297 CCTTGGGCTGCTCTTCAAAAGCCACAGAAGGGCTTGTCTTCTTGGAATGAACCTTACAAA 39356 Query 60202 GGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCC 60261 || ||||| || || | ||| | |||| || | || || | ||| | | || Sbjct 39357 GGCAATTTTGGTCAGCTGATGTCCCTTAAACAAGCTAGGCCGGACCTTAAAATCCTACCT 39416 Query 60262 TCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCAC-GATACGGATAAACG 60320 || || || || |||||||| | ||||| ||||| | |||||| || | | || || Sbjct 39417 TCCATTGGGGGCTGGACTCTTGCTGATCCTTTCTTCT-TTTTCACTGACAAAGTGAAGCG 39475 Query 60321 AAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGT 60380 | || || |||||||| || || || || || ||||| || ||||| ||||| Sbjct 39476 GGACCGCTTCGTTGATTCTGTGAAAGATTTCCTTCAAACCTGGAAGTTCTTCGATGGTGT 39535 Query 60381 CGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGA 60440 |||||||| ||||| || || ||||| || || || || ||| || | || | |||| Sbjct 39536 TGACATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAACCCCGACCTTGG-TAGCCCGA 39594 Query 60441 ACGCGATCGCGAAACGTACACCATTCTGTTGAAAGATTTACGCGAGGCGCTAGATCGA-T 60499 | ||| | ||| || || |||| || || ||||| | || | ||| Sbjct 39595 A--AGATGGAGAAGTTTATGTTGAACTAATGAAGGAGTTGCGCGAAATGTTA-AACGAGC 39651 Query 60500 TAACCCTCGAAACGAATCGAACGTACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACA 60559 | || |||||| | | |||||| | ||| || ||||| || || || | Sbjct 39652 TTTCCGAAGAAACGGGTAAGAAATACGAGCTCACCTCAGCTATTAGTGCTGGATGGGATA 39711 Query 60560 AAATCGCCGTCGTCGACTACACCGCTGCTCAAGAATATTTAGATTTAAtttttttGATGA 60619 | || ||||| || |||| || || ||| | ||| | || || || | |||| Sbjct 39712 AGATTCAAGTCGTAGATTACAGCGAAGCCCAAAAGTATATGGACCACATCTTCCTCATGA 39771 Query 60620 CGTACGATTTTAAAGGAGCCTGGTCGAATAACGATCTGGGCTATCAGACTACTCTATACG 60679 ||||| || ||||| |||||||| || || || || |||||||| | ||||| | Sbjct 39772 GTTACGACTTCAAAGGTGCCTGGTCCAACGACACCCTCGGTCATCAGACTCCCCTATATG 39831 Query 60680 CTCCTTCGTTTAATCCTAAAGAACATTATACTACCGATTTTGCCGTTCGTGCTCTACTCA 60739 | ||| | | ||||| |||||| |||||| || ||||||| ||| | |||| Sbjct 39832 CCCCTGCATGGAATCCCAAAGAAACTTATACCACTGATTTTGGTGTTAAATATTTACT-- 39889 Query 60740 AGCAAAAAGTCGAGAA---TaaaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCT 60796 || || || | ||| ||| || ||| | || || || || |||||||| ||||||| Sbjct 39890 TGCTCAAGGT-GTGAACCCTAAGAAGATTGTGGTAGGTGTAGCTATGTACGGACGCGGCT 39948 Query 60797 GGACCGGCGTAAGCGATTTTGTTGACGATAATAATCCATTTTCCGGAACGGCCAAGGGAC 60856 |||| || ||| || || ||| | ||| |||||||| | || | |||| |||| Sbjct 39949 GGACTGGTGTACACGGTT---ATGAAGGTAACAATCCATTCACTGGCAACGCCACAGGAC 40005 Query 60857 CGGTCAAAGGAACATGGGAAGACGGAGTCGTCGACTATAGAGAGATTTTCAAT--AATTT 60914 | || ||||| |||||| | || || || || || || || || || ||| |||| Sbjct 40006 CAGTAAAAGGTACATGGCAGGATGGTGTTGTTGATTACAGGGAAATAGCAAATGAAATTG 40065 Query 60915 C-GTCGCCAATAACCCGATGGAA----TATTACGATTCCGTTGCAAAAGCGGCGTACGTC 60969 | | | ||| |||| | ||||||| ||||||| |||| | || || Sbjct 40066 CTATGGGCAA-------ATGGGAGTTCCATTACGACAACGTTGCAGAAGCCCCATATGTG 40118 Query 60970 TTTAATAACTCGACCGGCGAGCTCATCACTTACGACAATCCTCGGTCGGTTCTGGATAAA 61029 || | |||||||| || || || || ||||||||||| || ||| | | || ||| Sbjct 40119 TTCAGGCCATCGACCGGTGACCTAATAACGTACGACAATCCGCGATCGACTATTGAGAAA 40178 Query 61030 GCAAAATATGTATTGGACTATAGCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGAC 61089 | || ||||| || ||| |||| ||| | ||||| ||||||||||| || ||| Sbjct 40179 GGCAAGTATGTGAGAAACAATAAACTGGGCGGTCTATTCGCGTGGGAGATCGATGCAGAC 40238 Query 61090 AACGGATTACTTCTAAACGCCATGAACA 61117 || || ||| ||||||| ||||||| Sbjct 40239 AATGGCGAACTGTTAAACGCTATGAACA 40266 >seq33159 Length=163697 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| |||| || || | ||||| | || || ||| ||| | Sbjct 97248 ATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAA-CCATC 97306 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || ||| ||||||| ||||| || || || || || ||||| Sbjct 97307 AGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCA 97366 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | || || | | || || || |||||||||| | | | | ||| ||||| Sbjct 97367 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACAA 97426 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||| || |||| || ||| | | ||||||||||| Sbjct 97427 TATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGG 97474 >seq27463 Length=372575 Score = 104 bits (114), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 ||| || || ||||| |||| | || || ||||| | || || ||| | || ||| | Sbjct 145879 TTTACAGTTTAACAA--TGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTT 145822 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 || || |||||| || |||||||| | |||||| |||||| || |||||||| Sbjct 145821 AGAGGTTGAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGG 145762 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 25338 || || || |||||||||||| | || | || ||||||||| | ||||||| | | Sbjct 145761 CATTCCACCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCAC 145702 Query 25339 TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGG 25398 | | || ||||| || || || ||||| || |||| || || || || | |||| Sbjct 145701 TTTGTCGGACTACAACATCCAGAAGGAATCAACACTTCACTTGGTTTTGAGGCTTCGAGG 145642 Query 25399 AGGAAA 25404 ||| || Sbjct 145641 AGGTAA 145636 >seq27267 Length=86652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 105771 CACGGCTTTCATGTACACGAATTCGGCGACACGAGCAACGGTTGCACGTCTGCCGGCGAG 105830 |||||||| || || |||||||||||||||| | ||||| |||||||| ||||||| Sbjct 6884 CACGGCTTCCACGTGCACGAATTCGGCGACAATACAAACGGGTGCACGTCCGCCGGCGCT 6943 Query 105831 CATTTCAA-CCCTACGGGCATGGCTCACGGCGCGCCCAGCTCTGCCGTTCGTCACGTCGG 105889 || ||||| ||| || ||| || ||||| || |||| | | |||| || ||||| || Sbjct 6944 CACTTCAACCCCAACAAGCA-GGAGCACGGTGCACCCACCGCCACCGTGCGCCACGTTGG 7002 Query 105890 TGATCTTGGCAATATTGATGC 105910 || || ||||| || || || Sbjct 7003 CGACCTCGGCAACATCGAGGC 7023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444757964270400