Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq34861 567 1e-156 seq39759 134 2e-26 >seq34861 Length=230841 Score = 567 bits (628), Expect = 1e-156 Identities = 1208/1791 (67%), Gaps = 32/1791 (2%) Strand=Plus/Plus Query 68356 ATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAG 68415 |||||| ||||| | || |||||||| | | || |||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 68416 TACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAA 68475 ||||| || ||||||||||| | ||||| | || || || || ||| | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 68476 TAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTA 68535 ||| | || || || | |||||| || | |||||||||||||| || || || ||||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 68536 TCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGT 68595 || || |||||||| || | | || || ||||||||||| ||| ||| | | ||| Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 68596 TTGATATCATCTGGAAG--GCTCG-TATTTTGAATGGATCCACCATCGGATAT-AATTAT 68651 | ||||| | ||||| |||| |||||||||| || ||||| | ||| |||||| Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGA---ACCATTGT-TATGAATTAT 60658 Query 68652 ---ATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 |||||| || || |||| ||| | | | || ||| || ||| | | ||| | Sbjct 60659 CTGATTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATG 60718 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 || || | ||||||||| |||||||| || | | |||||| || ||| |||| Sbjct 60719 GTTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGG 60778 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | |||||||||||||||| ||||| || || ||||| || ||||| || || | Sbjct 60779 TTCAAATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAA 60838 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 || | ||| | ||| |||| | | ||||| || |||| | |||| ||||| Sbjct 60839 TAAAAGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCA 60898 Query 68889 AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA 68948 ||||||| ||| || ||| | ||| ||||| | || || | ||||| Sbjct 60899 CAGATCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT 60958 Query 68949 TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGC 69008 ||| | ||| || |||| ||| | | ||| || ||||| ||||| || |||||||| Sbjct 60959 TCCTTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGC 61018 Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAA 69068 ||||| || |||||||| || || | | || || | ||| ||| ||| || | Sbjct 61019 TCCGTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCATA 61078 Query 69069 TGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCT 69128 |||| | | ||| | ||||| ||| || || || || || |||||||| || ||||| Sbjct 61079 TGGAATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTCT 61138 Query 69129 ATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 69188 |||| | | || ||| | | |||||||| | || || || |||| ||| || ||||| Sbjct 61139 GTGTCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTTT 61198 Query 69189 ATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC 69248 ||| ||||| | || | || || || || | ||| ||||| | || | Sbjct 61199 ATTTAGATTCTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATGTTTT 61258 Query 69249 ATCT---ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 |||| ||||||| |||| | || | || || | ||||| ||||| || |||| Sbjct 61259 ATCTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCATC 61318 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 | | ||||| | || || ||||| | |||||| ||||| || || || ||||| Sbjct 61319 TGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGATT 61378 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 || |||||||| ||| | ||||| | || ||||| || || | || || || ||||| Sbjct 61379 TTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTC 61438 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTG--TAA 69483 | || | || || || | ||||| | | || | || |||| ||| Sbjct 61439 GACTTGTGCCTCTATTATTGCCTTCCACAGTTC-------TTGAGCTCGAACTTGCTTAA 61491 Query 69484 CG-----CTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACAT 69538 || ||| || | ||| |||| | ||||| ||| ||||| ||||||||| | Sbjct 61492 CGAACCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGT 61551 Query 69539 CATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTC 69598 | | | ||||| || || | || ||||| || ||||| ||||| | | ||| | Sbjct 61552 CGGCAAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACAC 61611 Query 69599 GTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTT 69658 | |||||||||| ||| |||||||| | ||| ||| | ||||| | ||| |||| Sbjct 61612 GGTTCATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTT 61671 Query 69659 CATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTA 69718 | || || ||||| ||||| ||||| | |||||| | || |||||||||||| ||||||| Sbjct 61672 CTTTACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTA 61731 Query 69719 GATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGT 69778 || || || | | || ||||||||||| ||||| || || | || || || || | Sbjct 61732 AGTAAATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTAT 61791 Query 69779 TATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATAT 69838 |||| || ||||||| ||| || | || |||||| || || || || |||| || | Sbjct 61792 TATTGTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGT 61851 Query 69839 AACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGA 69898 | | ||| ||| | ||| | || | || || || || || || ||| || | Sbjct 61852 AGGTACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAA 61911 Query 69899 TTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTA 69957 ||| ||||| |||| ||||||||||||||||| || |||||||||||| ||| || || Sbjct 61912 TTAATGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTA 61971 Query 69958 AGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGAT 70017 | || || || ||| | ||| | | |||| | ||| || ||||| ||| | Sbjct 61972 TG-AGGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTT 62030 Query 70018 GCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC- 70076 || |||||||| ||||||| || | || ||||| ||||| || |||| || || || Sbjct 62031 GCATGAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCT 62090 Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 ||| ||| || || || | ||| ||||| | ||||||||| |||| ||| Sbjct 62091 TCAC-CATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTC 62140 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 |||| |||| || ||||| ||||||||||| ||||| |||| ||| || |||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 ||| || || || | |||||| ||| ||||| | ||||||||||| | || ||||| Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 70458 TATAGTTGTAACTCC 70472 | |||||| ||||| Sbjct 64214 CACAGTTGTTACTCC 64228 >seq39759 Length=128263 Score = 134 bits (148), Expect = 2e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| ||||| || | || || || || || || ||||| ||||| | ||||||||| Sbjct 66863 TACATCTCTGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCA 66804 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 |||||| || ||| |||||| |||| |||| |||||||| ||||| |||||| | Sbjct 66803 CCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAGTTTTCATTAACTATACCATCAGAA 66744 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAA 40059 || ||||||||||||||||||||||||||||| Sbjct 66743 GCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 107 bits (118), Expect = 3e-18 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||||| || || || || || || ||||| | || ||||| | Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| ||||| | ||||| ||| ||||||||||| |||||||| |||||||| | Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTA-TG--TATCCACTTCTGTGCCCAATCAG 39815 |||| | | || || | ||| | ||| || ||||| | | ||||||| || | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTG 67155 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | || ||||||||||| || | ||||| || ||||| || Sbjct 67154 CCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686389582810800