Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq39759 102 6e-17 >seq39759 Length=128263 Score = 102 bits (112), Expect = 6e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| ||||||||||| || || ||||| |||||||| ||||| || ||| Sbjct 66724 GTATTGGCATTTTTTGCTGCTTCTGATGGTATAGTTAATGAAAACTTGGTGGAACGATTT 66783 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | |||||||||||| | |||||| | | |||||||| || |||||||| || || Sbjct 66784 TCACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTATGGATTCCAAATTGCTATGGAG 66843 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 ||| | || || || |||||| | ||||| ||||| || |||| Sbjct 66844 AATGTACACTCAGAGATGTACTCATTGCTGATTGATACTTATATCA 66889 Score = 102 bits (112), Expect = 6e-17 Identities = 154/213 (72%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAG-CAGACTGGGCCCTTA 44096 || || ||||| || ||||| |||| || | |||| | |||| |||||||||| || Sbjct 67112 TTATTCAATGCAATTGAAACTTTACCATGTG--TAAAGAAAAAGGCAGACTGGGCACTGC 67169 Query 44097 AATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 ||||||| | | || || ||||| ||||| | || || ||||||| ||| | Sbjct 67170 AATGGATTGGCAGTAAAACTGCAAACTTTGGGGAACGGATAGTTGCCTTTGCAGCTGTAG 67229 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 |||| || |||||||| ||| ||||| | ||||| ||||| ||||| || || |||| Sbjct 67230 AAGGAATCTTCTTTTCCGGAAGCTTTGCCTCAATATTCTGGTTGAAGAAGCGGGGCTTGA 67289 Query 44214 TGCCTGGGTTGACGTTTTCA--AATGAGTTAAT 44244 |||| || |||| ||||| |||||| |||| Sbjct 67290 TGCCCGGTCTGAC--TTTCAGCAATGAGCTAAT 67320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 ||||||||| | || ||| | || || || ||||||| ||| || |||||||||||| Sbjct 66041 GAAAATCCGCGGCGTTTCGTCATCTTCCCCATCCAATATCCTGATATCTGGCAAATGTAC 66100 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTT 43788 |||||||| | || ||||| ||||||| || ||||| ||||| Sbjct 66101 AAAAAAGCTGAAGCTTCATTCTGGACAGTGGAGGAAGTGGATTT 66144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397163083622350