Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq34861 122 1e-22 seq39759 86.0 8e-12 >seq34861 Length=230841 Score = 122 bits (134), Expect = 1e-22 Identities = 451/693 (65%), Gaps = 19/693 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||||| ||| |||||||||| |||||||||| |||||||||||||| || | Sbjct 60757 GGTAAATGTTTGATGTAAATGGTTCAAATGATTCATTATTTCCCAAGATTTGTGCTGTAG 60816 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 | || || |||||||| || | ||||| || ||||| || | | || || Sbjct 60817 ATGCCGTGGGCATTGGGGCTAATAAAAGTGAATTGCGAAGTCCATATTTGGCAATTTTTT 60876 Query 110826 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACT 110882 |||| | |||| ||||| | || | || | | |||| | |||||||| ||| | | Sbjct 60877 CCTTTAAAACAGTCCAGTCCCACAGATCAGTTGGAGTTTTA---TCCCACATATCATATT 60933 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | || ||| || ||| || ||| | || ||| || || ||| | Sbjct 60934 GCAAGATGCCCTGGCTTGCCGGACTTCCTTCATAAGTACTATAAACTCCATGTTTTTCCG 60993 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | | ||| || || || || | | | ||| || || ||||||||||| | || | Sbjct 60994 CGAGTTCGCAACTGGCTTCTAATGCTCCGTAGTATATTGTTTCAAAGATTTGTTGGTTAA 61053 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGA 111061 | | || || || ||| ||| | | ||| || | |||| ||| || | | Sbjct 61054 GTTTAATTGCGTCTTCACTTTCATATG-GAATGCGCATAAGTACAAATGTATCGGCTAAA 61112 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAAC 111120 ||||| || || | ||| || |||||||||||||| ||||| || || ||| || Sbjct 61113 CCTTGCACTCCAATACCTATCGGTCTGTGTCGCATGTTAGAATTCTTTGC-TTCTGGCAC 61171 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || || | || ||||||| | |||||||| | || | |||| |||| ||| Sbjct 61172 TGGGTAGTAGTTAACATCAATGATTTTATTTAGATTCTGTGTTATTGTCTTCGTGACTTC 61231 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA-CTTTGGAAGGGCGA 111239 | | |||| | ||| | | || | |||||||| ||| | || | || || | Sbjct 61232 TTTCAATTTTGTAAAATTATATGT---TTTATCTTCATTAACAAATCTATTTAA-CGCAA 61287 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTCTGT 111297 |||| ||||| || || || || ||||| || | || || || | |||||| || Sbjct 61288 TTGAAGCCAAGTTACAGACTGCAACTTCATCTGCTGA--AGTATATTCAACAATTTCAGT 61345 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 ||| || || | ||||| || || | ||| ||||| ||||| || | || || | Sbjct 61346 ACACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGA 61405 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||| ||||| |||||||| || || || || || Sbjct 61406 ATCTTTGTACAGCATGTATGGTGTGCCTGTTTC 61438 Score = 84.2 bits (92), Expect = 3e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 |||||||| ||||| | || || ||| ||||| | | | || |||| ||||| Sbjct 61887 CCAATACCACCAGCTGATTTGGAAATTAATGCACATTGTTTTAATGTGTCATATATACCT 61946 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || || || || | || || ||||||||| || | ||||||||||| || Sbjct 61947 TCAATGCTATCATCTTTCATTGCTATGAGGAAGCAAGAAGATAATTGCGGTCTTGGAGTT 62006 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGGGACATCTTGTCGTA 112014 | ||| ||| | || || |||| ||| |||| ||| || |||| | || ||| Sbjct 62007 GCTGCAGAGAACAATGTGGGACTTGCATGAGTGAA-ATATTTTTCCGACAACAAGTTGTA 62065 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 || || | | | | |||||||||||| || ||||| ||||| | ||| ||||| | ||| Sbjct 62066 GGTTTCTATGGCTGCATCAATGTCTTCACCATGGATCCCGATAGAGACTCGCATTAGCAT 62125 Query 112075 GTACTGTGGGGTTTC 112089 | |||||| |||| Sbjct 62126 ATGCTGTGGTCTTTC 62140 >seq39759 Length=128263 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| ||||| || ||||| ||| ||||| ||||| | |||||||||| Sbjct 67334 CCTCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCT 67275 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||||||| | || | | || ||||| |||||||| || || ||| ||||| | Sbjct 67274 TCAACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGG 67215 Query 122798 CAAAAAGGCGTTCGGCGAAGGAGCGAGACTT--TGCATCAAACCATTTCATTGCCCATTT 122855 ||| | ||||| | ||| || || ||| ||| ||||| || |||||| | Sbjct 67214 CAACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGC--CAATCCATTGCAGTGCCCAGTC 67157 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 ||||| |||| | |||||||| ||||| || || | ||||| Sbjct 67156 TGCCTTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAATAA 67112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627557286312000