Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq55175 264 1e-65 seq33159 140 3e-28 seq33871 125 6e-24 seq27463 118 9e-22 seq22323 87.8 2e-12 >seq55175 Length=171662 Score = 264 bits (292), Expect = 1e-65 Identities = 794/1214 (65%), Gaps = 24/1214 (2%) Strand=Plus/Minus Query 53361 TCCTAAACCCTTGTGTATCGCATTCAAAAGATCTCCGTTGTCCGCGTCGATTTCCCACGC 53420 ||||| ||| ||| || || || || || || || ||||| || ||||| |||||||| Sbjct 40277 TCCTAGGCCCATGTTCATAGCGTTTAACAGTTCGCCATTGTCTGCATCGATCTCCCACGC 40218 Query 53421 AAACAATCCACCGAGATCGTTTTCAATCACATACTGGCCCTTGTC--TAGCACGGAATCG 53478 || | || || || | || | ||||||||| ||| || || ||| || |||| Sbjct 40217 GAATAGACCGCCCAGTTTATTGTTTCTCACATACTTGCCTTTCTCAATAGT-CG--ATCG 40161 Query 53479 ATGCT-GTCGTAACTGATTAAATCGCCAGAGTTTTTATTGAATACAAACGCTGCTTTGGC 53537 | | |||||| | |||| || || | | |||| ||| | | |||| || Sbjct 40160 CGGATTGTCGTACGTTATTAGGTCACCGGTCGATGGCCTGAACACATATGGGGCTTCTGC 40101 Query 53538 TGTAGTGTCGTAAGTGTAATCGTATTG----ATGGCCAATTTTTTCGTCAATTTTTCGGT 53593 |||||||| | | || ||| || || | || || | | |||| | || Sbjct 40100 AACGTTGTCGTAATGGAACTCCCATTTGCCCATAGCAATTTCATTTG-CTATTTCCCTGT 40042 Query 53594 AATCAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAACG 53653 ||||||| || || || | |||||| ||| | || || || || || || ||||| | Sbjct 40041 AATCAACAACACCATCCTGCCATGTACCTTTTACTGGTCCTGTGGCGTTGCCAGTGAATG 39982 Query 53654 GATTGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCGA 53713 |||||| | | || ||| || |||||||| ||||| |||||||| || || || | Sbjct 39981 GATTGTTACCTTCATAACCGTGTACACCAGTCCAGCCGCGTCCGTACATAGCTACACCTA 39922 Query 53714 GAACAATTTTTTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGGCCG 53773 ||||| || | | | || ||| | || || || ||| ||| | | Sbjct 39921 CCACAATCTTCTTAGGGTTCACACCTTGAGCAAGTAAATATTTAACACCAAAATCAGTGG 39862 Query 53774 TGTAATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCAAATCGG 53833 | ||| || ||||| ||| | || || || | | || ||||| || | | Sbjct 39861 TATAAGTTTCTTTGGGATTCCATGCAGGGGCATATAGGGGAGTCTGATGACCGAGGGTGT 39802 Query 53834 TGTTTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGGTATTGTT 53893 ||| ||||| || ||||| || || || ||| | || || ||||| || | || Sbjct 39801 CGTTGGACCAGGCACCTTTGAAGTCGTAACTCATGAGGAAGATGTGGTCCATATACTTTT 39742 Query 53894 GGGCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCGCTAGTCA 53953 |||| |||| || | ||||| ||| ||||| || ||||| || || || | Sbjct 39741 GGGCTTCGCTGTAATCTACGACTTGAATCTTATCCCATCCAGCACTAATAGCTGAGGTGA 39682 Query 53954 ACTCGAACTTTCGT-CCAGTTTCCAATTCCAATTGATCC---AACATTTGTCGCAACTCT 54009 |||| | |||| | || ||||| ||| | | || ||||||| |||||||| Sbjct 39681 GCTCGTA-TTTCTTACCCGTTTC---TTCGGAAAGCTCGTTTAACATTTCGCGCAACTCC 39626 Query 54010 TTTAACAACACCACATACGTTAAACTATCTTTTTGAGGATCGCCCACGGACGGA-TTGGC 54068 || | | | ||||| | | |||||| | | ||| || ||| || || Sbjct 39625 TTCATTAGTTCAACATAAACTTCTCCATCTTTCGGGCTA----CCAAGGTCGGGGTTAGC 39570 Query 54069 ACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCACGTCAA 54128 || || |||||||| || |||||||||| ||| |||||||| || || ||||| || Sbjct 39569 TCCCTTACCGCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTTTG 39510 Query 54129 TAGGAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAATGGTA 54188 ||||| || ||| ||||| || || | || || || |||| | | Sbjct 39509 AAGGAAATCTTTCACAGAATCAACGAAGCGGTCCCGCTTCACTTTGTCAGTGAAAAAGAA 39450 Query 54189 AAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGATTCGC 54248 || ||||| | | ||||| || || || || |||| | ||| | || || | || Sbjct 39449 GAAAGGATCAGCAAGAGTCCAGCCCCCAATGGAAGGTAGGATTTTAAGGTCCGGCCTAGC 39390 Query 54249 TTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAGGCGGAGAC 54308 || ||| | || ||| | ||| |||||||||||||| || ||||| ||||| | || | Sbjct 39389 TTGTTTAAGGGACATCAGCTGACCAAAATTGCCTTTGTAAGGTTCATTCCAAGAAGACAA 39330 Query 54309 GCCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTAAAATCCGA 54368 ||| || || || ||||| | || ||||||||||| || |||| || || ||||| Sbjct 39329 GCCCTTCTGTGGCTTTTGAAGAGCAGCCCAAGGATCGTGAATGGAAACCTTGAAATCTTC 39270 Query 54369 CCGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTTAAACTGTC 54428 |||||| ||| || | || ||||||| ||||||||| || ||||||||||| Sbjct 39269 ACGGCCACTGCATGAACGCTGAAGAGCTTGAAAACTGCCTTCGATTTCCTTTAAACTGTC 39210 Query 54429 ATTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTCAAATTAGG 54488 ||| || || ||||| || |||||||| | |||||| ||||||||||| |||| |||||| Sbjct 39209 ATTGATGCCATCGCCTCCACAAATTGGAATAAAACCATACAAAAGATGAGTCAGATTAGG 39150 Query 54489 CACGGGCACTTTGTCCATTGGAAAATTTCGTCCGTACACTCCCCATTCTACAAAATAGGC 54548 | || | || | ||| || |||||| ||| || |||||||| || || || || Sbjct 39149 AATTGGTATACGATCGACTGGGAATTTTCGTGGGTAAACACCCCATTCCACGAAGTAAGC 39090 Query 54549 GGCCACAACTTTGC 54562 | |||||||||| Sbjct 39089 TCCAACAACTTTGC 39076 >seq33159 Length=163697 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| |||| || | || |||||||| || Sbjct 97248 ATGCAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATCA 97307 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||||||||| || |||||||| || || ||||| Sbjct 97308 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCAG 97367 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || | ||||| || || ||||||| ||||| Sbjct 97368 CAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACAAT 97427 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || ||||| | |||||| | || ||||| Sbjct 97428 ATTCAAAAAGAATCTACACTTCACTTGGTGCTCCGTTTGAGAGGAGGCAT 97477 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| |||| || | || ||||| || || Sbjct 96792 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCTTGGAGGTGGAGCCTTCG 96851 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| || ||||| || || || || Sbjct 96852 GACACAATTGAAAATGTTAAAGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 96911 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||||||| |||| || || || | || || |||||| Sbjct 96912 CAGAGGTTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACACTCTCTGACTACAAC 96971 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || || || || Sbjct 96972 ATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCCGTCTACGTGGAGGTAT 97021 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| || || | || || | ||||| || || || Sbjct 97704 ATGCAGATCTTTGTAAAAACACTGACTGGTAAAACCATCACATTGGAAGTTGAGCCTTCT 97763 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||||| || || || || || || || Sbjct 97764 GATACTATTGAAAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 97823 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||| || | ||||| | || | || || |||||| Sbjct 97824 CAGAGGTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGCACACTCTCAGACTACAAC 97883 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 97884 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGTAT 97933 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | || || | ||||| ||||| ||| Sbjct 97020 ATGCAGATTTTCGTCAAAACCTTGACTGGGAAGACCATCACATTGGAAGTTGAACCCTCC 97079 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || ||||| || |||||||| || || || || Sbjct 97080 GACACAATTGAAAATGTTAAGGCGAAGATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 97139 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| ||||| || | || | || || ||||| Sbjct 97140 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAGGATGGACGTACATTGTCAGACTACAAT 97199 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || ||||| || || | || || || | ||||| Sbjct 97200 ATCCAGAAGGAATCTACTCTTCACTTAGTCCTCCGTTT 97237 >seq33871 Length=3159 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || ||||| | || || | ||||||||||| || Sbjct 3125 ATGCAGATCTTCGTTAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTGGAACCTTCA 3066 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| ||||| || ||||| |||||||| || || || || Sbjct 3065 GACACCATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3006 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||| || | ||||| | || | || || |||||| Sbjct 3005 CAGAGGTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGCACACTCTCTGACTACAAC 2946 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| ||| | || ||||| | ||| | || || || Sbjct 2945 ATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCCGTCTTCGTGGCGG 2899 >seq27463 Length=372575 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || || | || || ||| | || Sbjct 145865 ATGCAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCT 145806 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 145805 GACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAG 145746 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||||||||| |||||||| | || | || || |||||| Sbjct 145745 CAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCGGACTACAAC 145686 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || ||||| || || | || ||||||||| Sbjct 145685 ATCCAGAAGGAATCAACACTTCACTTGGTTTTG 145653 >seq22323 Length=191951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 49237 CTTATGACGCCTGTCACGCCTATGTTGGCGGACGTGTGCAAATCCATGTCAACGGCGATG 49296 ||||||||||| ||| || |||||||| || | || ||||| | || ||| ||| Sbjct 187108 CTTATGACGCCAGTCCTTCCAATGTTGGCTGAAGCTTGTAAATCAGTTGAAATGGCTATG 187049 Query 49297 AAAAAGTGTCCCGACGGAATGTTGGCGGAAATTAAATATGACGGCGAACGTGTGCAAATT 49356 || || ||||| | || ||||| | ||||| |||||||| || ||||| |||||| || Sbjct 187048 AAGAAATGTCCGAATGGCATGTTCTCTGAAATAAAATATGATGGTGAACGGGTGCAAGTT 186989 Query 49357 CACAAAAA 49364 || ||||| Sbjct 186988 CATAAAAA 186981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434589656054400