Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq34861 571 8e-158 seq39759 113 6e-20 seq22323 93.3 6e-14 >seq34861 Length=230841 Score = 571 bits (632), Expect = 8e-158 Identities = 1208/1790 (67%), Gaps = 28/1790 (2%) Strand=Plus/Plus Query 76764 ATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAG 76823 |||||| ||||| | || |||||||||| | || || |||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 76824 TACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAA 76883 ||||| || ||||| ||||||| ||||| | || || || || ||||| ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 76884 TAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTA 76943 ||| | || || || | |||||| || | || ||||||||||| || || || ||||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 76944 TCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGT 77003 ||||| |||||||| || | || || || ||||||||||| |||||| | | |||| Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 77004 TTGATATCATCTGGAA---GGTTTGTATTTTGAATGGAACCACCATCTGATAT-AATTGT 77059 | ||||| | ||||| | | |||||||||| |||||| || ||| |||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGAACCA----TTGTTATGAATTAT 60658 Query 77060 ---ATTCTTTATATCATCATTCCACA-ATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115 |||||| || || |||| ||| | || | | || || || ||| | | |||| Sbjct 60659 CTGATTCTTCATGTCTTCATCCCATAGATCTGC-CTGCGTCAAGTCTCGCAACAAATGAT 60717 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 | || || | ||||||||||||||| || || | | |||||| || ||| ||| Sbjct 60718 GGTTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATG 60777 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 |||| | |||||||| |||||||| ||||| || ||||| || || ||||| || || | Sbjct 60778 GTTCAAATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTA 60837 Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 77295 || | ||| | || |||| | | ||||| || |||| | |||| |||| Sbjct 60838 ATAAAAGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCC 60897 Query 77296 AAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATG 77355 | ||||| | || |||||| | ||| ||||| | || || | || || Sbjct 60898 ACAGATCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGAC 60957 Query 77356 ATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATG 77415 ||| | ||| || |||| ||| | | |||| || ||||| ||||| ||||| |||| Sbjct 60958 TTCCTTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATG 61017 Query 77416 CTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAA 77475 ||||||| || |||||||| || || | | || || | ||| || ||| ||| Sbjct 61018 CTCCGTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTCACTTTCAT 61077 Query 77476 ACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTC 77535 | ||| | | ||| | ||| | ||| ||||| || || ||||||||||| || |||| Sbjct 61078 ATGGAATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGGTC 61137 Query 77536 TATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTT 77595 | |||| | | || ||| | || |||||||| | || || || |||| || || |||| Sbjct 61138 TGTGTCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGATTT 61197 Query 77596 TATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTC 77655 |||| ||||| | | || || || || | ||| ||||| | || || Sbjct 61198 TATTTAGATTCTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATGTTT 61257 Query 77656 CATCT---ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT 77712 |||| ||||||| | || || || || || || | ||||| ||||| || |||| Sbjct 61258 TATCTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTTCAT 61317 Query 77713 TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGAT 77772 || | ||||| | || || ||||| | |||||| ||||| || ||||| |||| Sbjct 61318 CTGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAAGAT 61377 Query 77773 TTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTT 77832 ||| ||| || || ||| |||| ||||| || || || || || | || || || |||| Sbjct 61378 TTTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTT 61437 Query 77833 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATC 77892 | | |||| || || || | ||||| | || ||| || | | || | Sbjct 61438 CGACTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGC-----TCGAACTTGCTTAAC 61492 Query 77893 G--CCTCTCT--CT-TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATC 77947 | ||||| | || ||| |||| ||||| ||||||||| ||||||||| || Sbjct 61493 GAACCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACAGTC 61552 Query 77948 ATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCG 78007 | | |||||||| || | |||||||| || ||| |||||| | ||| || Sbjct 61553 GGCAAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACG 61612 Query 78008 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | |||||| ||||||| |||| ||||| |||| | ||| ||||| Sbjct 61613 GTTCATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTCTTC 61672 Query 78068 ATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 78127 || || ||||||||||| ||||| | |||||| | || |||||||||||| ||||||| Sbjct 61673 TTTACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTCTAA 61732 Query 78128 ATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTT 78187 || ||||| | | | || ||||||||||| ||||| || || | ||| || || || || Sbjct 61733 GTAAATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGTATT 61792 Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 ||| || |||||||||||||| | || ||| || || ||| || || |||| || || Sbjct 61793 ATTGTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTATGTA 61852 Query 78248 ACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 | || ||| | ||| | || || || || || || || || || || Sbjct 61853 GGTACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGAAAT 61912 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGTTAA 78366 || || || |||| ||||| || || ||||| || || || ||||| ||| || || Sbjct 61913 TAATGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGCTAT 61972 Query 78367 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 | || || || ||| | ||| | |||| ||||| || ||||| ||| || Sbjct 61973 G-AGGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGACTTG 62031 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCC 78486 |||| || || ||||||| || | | ||||| ||||| || |||| || ||||| Sbjct 62032 CATGAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGTCTT 62091 Query 78487 ATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 ||| || || | | || ||||| | ||||||||| ||||||||| Sbjct 62092 CACCATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCA 62141 Score = 107 bits (118), Expect = 3e-18 Identities = 120/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 |||| |||| || ||||| ||||||| |||||||| ||||| ||||||||||| | || Sbjct 64095 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTTGCAGCTAACACTGC 64153 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 |||||| || || | |||||| ||||||||| | || || |||||| | || || || Sbjct 64154 ATAATCCGGGTGGTCTGTAGTCATAGTGGCTGCAGTCTCCGCAGCTAAATTGTCCAATTC 64213 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 | |||||| || ||| || | ||| | |||||||| Sbjct 64214 CACAGTTGTTACTCCAGAGTAAATTCCATTGATAACTTT 64252 >seq39759 Length=128263 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || ||||| | ||| || || || || || ||||| ||||| | || ||||| Sbjct 66863 TACATCTCTGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCA 66804 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || || || || |||||||||| |||| || ||||| ||||| |||||| | Sbjct 66803 CCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAGTTTTCATTAACTATACCATCAGAA 66744 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAA 48583 |||||||||||||| ||||||||||||||||| Sbjct 66743 GCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 >seq22323 Length=191951 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 170983 TCCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGG 171042 ||| ||||| || ||| | ||| | || ||| | | ||| | || |||| ||| ||| Sbjct 187091 TCCAATGTTGGCTGAAGCTTGTAAATCAGTTGAAATGGCTATGAAGAAATGTCCGAATGG 187032 Query 171043 AATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAA 171102 ||||| | ||| ||||||||||||||||||| || |||||||||||||| | | Sbjct 187031 CATGTTCTCTGAAATAAAATATGATGGTGAACGGGTGCAAGTTCATAAAAAAGGTTCAGA 186972 Query 171103 TTTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAA 171162 ||| | |||| || | | || |||||| | | || ||||| || || | || Sbjct 186971 ATTTAAATACTTTTCTCGAGCCTTAAAGCCAGTTATGGCCCACAAAGTCAATCATTTTAA 186912 Query 171163 GGAATACCTTCCTAAAGCATT 171183 ||| || || ||||||||||| Sbjct 186911 GGAGTATCTACCTAAAGCATT 186891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694143717220800