Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq34861 585 4e-162 seq39759 131 2e-25 seq22323 89.7 7e-13 >seq34861 Length=230841 Score = 585 bits (648), Expect = 4e-162 Identities = 1218/1800 (68%), Gaps = 34/1800 (2%) Strand=Plus/Plus Query 75359 ATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAG 75418 |||||| ||||| | |||||||||||| | | | || |||||| | || | || Sbjct 60363 ATTTTAGATTTATCAACCGTGAACTGAATTGCATTAGCGGCAGGTTTTATGCGCAAGTAA 60422 Query 75419 TACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAA 75478 ||||| || ||||| ||||||| ||||| | || || || || ||| | ||| | Sbjct 60423 TACATTCCCGTTTTCAGACCCATTTTCCATGCATAAAAGTGAATCGATGTCAACTTGCCA 60482 Query 75479 TAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTA 75538 ||| |||| || || | |||||| || | || ||||||||||| || || || ||||| Sbjct 60483 TAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGATCTATAAATGCACCTCTG 60542 Query 75539 TCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGT 75598 ||||| |||||||| || | || || || ||||||||||| |||||| | | |||| Sbjct 60543 TCAGCAGCCATTTTAATTGTTGTTTTAACAGAAATTTCCCAAACAGTTTTATACAATTGT 60602 Query 75599 TTGATATCATCTGGAA---GATTTGTATTTTGAATGGATCCGCCATCAGATAT-AATTGT 75654 | ||||| | ||||| | | |||||||||| || |||| | ||| |||| | Sbjct 60603 CTAATATCCTTTGGAATCCGCTCAATATTTTGAATAGA---ACCAT-TGTTATGAATTAT 60658 Query 75655 ---ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 75711 |||||| || || |||| ||| | | | || || || ||| | | |||| | Sbjct 60659 CTGATTCTTCATGTCTTCATCCCATAGATCTGCCTGCGTCAAGTCTCGCAACAAATGATG 60718 Query 75712 ATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGG 75771 || |||| ||||||||||||||| || || | || |||||| || ||| |||| Sbjct 60719 GTTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGGTAAATGTTTGATGTAAATGG 60778 Query 75772 TTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCAC 75831 ||| | |||||||| |||||||| ||||| || || || || || ||||| || || | Sbjct 60779 TTCAAATGATTCATTATTTCCCAAGATTTGTGCTGTAGATGCCGTGGGCATTGGGGCTAA 60838 Query 75832 CAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA 75891 || | ||| | || |||| | | ||||| || |||| | |||| ||||| Sbjct 60839 TAAAAGTGAATTGCGAAGTCCATATTTGGCAATTTTTTCCTTTAAAACAGTCCAGTCCCA 60898 Query 75892 AAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGA 75951 ||||| | ||| |||||| | ||| ||||| | || || | ||| || Sbjct 60899 CAGATCAGTTGGAGTTTTATCCCACATATCATATTGCAAGATGCCCTGGCTTGCCGGACT 60958 Query 75952 TCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGC 76011 ||| | ||| || ||| || | ||||| || ||||||||||| || ||||| || Sbjct 60959 TCCTTCATAAGTACTATAAACTCCATGTTTTTCCGCGAGTTCGCAACTGGCTTCTAATGC 61018 Query 76012 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT--CTTGCG-CTTCAAGACTATC 76068 ||||| || |||||||| || || | | ||||| | ||||| |||| ||| || Sbjct 61019 TCCGTAGTATATTGTTTCAAAGATTTGTTGGTTAAGTTTAATTGCGTCTTC---ACTTTC 61075 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 | | ||| | | ||| | ||||| ||| |||| || || ||||||||||| || || Sbjct 61076 ATATGGAATGCGCATAAGTACAAATGTATCGGCTAAACCTTGCACTCCAATACCTATCGG 61135 Query 76129 TCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAAT 76188 ||| |||| | | || ||| | | |||||||| | ||||| || |||| ||| || || Sbjct 61136 TCTGTGTCGCATGTTAGAATTCTTTGCTTCTGGCACTGGGTAGTAGTTAACATCAATGAT 61195 Query 76189 TTTATTGAGATTTCTG-ACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATT 76247 |||||| ||| ||||| | | || || || || | ||| ||||| | || Sbjct 61196 TTTATTTAGA-TTCTGTGTTATTGTCTTCGTGACTTCTTTCAATTTTGTAAAATTATATG 61254 Query 76248 TTCCATCT---ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCT 76304 || |||| | ||||| |||| | || || || || | ||||| || || || | Sbjct 61255 TTTTATCTTCATTAACAAATCTATTTAACGCAATTGAAGCCAAGTTACAGACTGCAACTT 61314 Query 76305 CATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364 ||| || | ||||| | || || || || | |||||| || || || || |||| Sbjct 61315 CATCTGCTGAAGTATATTCAACAATTTCAGTACACAAATTACTGCATTTAATGGTGCCAA 61374 Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424 |||||| ||| || || ||| | |||||||| || || || || | | || || || | Sbjct 61375 GATTTTTTTGATTACTTTTTCTATTACATGAATCTTTGTACAGCATGTATGGTGTGCCTG 61434 Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT-----TTTATTATAGA 76479 |||| | |||| || || || | ||||| | || |||| || ||| || Sbjct 61435 TTTCGACTTGTGCCTCTATTATTGCCTTCCACAGTTCTTGAGCTCGAACTTGCTTAACGA 61494 Query 76480 TTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAAC 76539 | | ||| || ||| |||| | |||||| ||||||||| ||||||||| Sbjct 61495 -----ACCTCTTTTCCTGTTCGTATTTTTCATATAATGTTTCAAATTCTTCTCCCCAACA 61549 Query 76540 ATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAAC 76599 || | | |||||| || || | || ||||| || |||| |||||| | ||| Sbjct 61550 GTCGGCAAGACCAGGGCAATCGTGAGGGCACATTAAACTCCACATTTCATCTTTTTCAAC 61609 Query 76600 CCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTC 76659 || |||||||| | |||||| ||||||| |||| ||||| |||| | ||| || Sbjct 61610 ACGGTTCATAAATAAATCAGGAATCCATAAAGCATAAAATAATTCTCTTGCTCTTACCTC 61669 Query 76660 TTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 ||| || || ||||||||||| ||||||| ||||| | || |||||||||||| ||||| Sbjct 61670 TTCTTTACCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAATGCCAAGGTTC 61729 Query 76720 TAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGT 76779 || || || || | | | || ||||||||||| ||||| || || | ||| || || || Sbjct 61730 TAAGTAAATTGCGAAAGCCCCTGGTCGTTTATTGCCTCCTTGGTCAACATACCTAGCTGT 61789 Query 76780 GTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAAT 76839 ||||| || |||||||||||||| | || || || || || || || |||| || Sbjct 61790 ATTATTGTACACTCTCAACATTGGTACAAGACCATTGGAAACTCCGTTAGTACCAGCTAT 61849 Query 76840 ATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGA 76899 || | || || | ||| | || | || || || || || || ||| || Sbjct 61850 GTAGGTACCTTTTGATCTGATACAATGAACATGTACTCCAATACCACCAGCTGATTTGGA 61909 Query 76900 GATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGT 76958 |||| ||||| |||| ||||||||||| || || || || |||||||| ||| || Sbjct 61910 AATTAATGCACATTGTTTTAATGTGTCATATATACCTTCAATGCTATCATCTTTCATTGC 61969 Query 76959 TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAG 77018 || | || || || ||| | ||| | |||| ||||| |||||||| ||| Sbjct 61970 TATG-AGGAAGCAAGAAGATAATTGCGGTCTTGGAGTTGCTGCAGAGAACAATGTGGGAC 62028 Query 77019 ATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT 77078 |||||||||||| ||||||| || | | ||||| ||||| || |||| || || | Sbjct 62029 TTGCATGAGTGAAATATTTTTCCGACAACAAGTTGTAGGTTTCTATGGCTGCATCAATGT 62088 Query 77079 CCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCT 77138 | ||| || || | || ||| ||||| | ||||||||| |||| ||| || ||| Sbjct 62089 CTTCACCATGGATCCCGATAGAGACTCGCATTAGCATATGCTGTGGTCTTTCAGCAATCT 62148 >seq39759 Length=128263 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| ||||| || | || || ||||| || || ||||| ||||| | ||||||||| Sbjct 66863 TACATCTCTGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCA 66804 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 ||| || || ||| |||||||||| ||| || ||||| ||||| |||||| | Sbjct 66803 CCAATTTGAACTTCTTGTGAAAATCGTTCCACCAAGTTTTCATTAACTATACCATCAGAA 66744 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||||||||||||||||||||||||||||| Sbjct 66743 GCAGCAAAAAATGCCAATACATGTTTAATAAA 66712 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || |||| ||| ||||| || ||||||||||||| || || |||||||| ||||| | | Sbjct 66150 TTGGATAAATCCACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTACATTTGC 66091 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || |||||| |||||||||| || || || || || Sbjct 66090 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 66056 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||| ||||| || || || || || || ||||| | || ||||| || Sbjct 67332 TCATCTCTAGAAATTAGCTCATTGCTGAAAGTCAGACCGGGCATCAAGCCCCGCTTCTTC 67273 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| ||||| | || || ||| |||||||| || ||||||||||| || || || Sbjct 67272 AACCAGAATATTGAGGCAAAGCTTCCGGAAAAGAAGATTCCTTCTACAGCTGCAAAGGCA 67213 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTA-TG--AATCCACCTTTGAGCCCAATCAGCC 46830 || | | || || | | ||| ||| || |||||| | ||||| || ||| Sbjct 67212 ACTATCCGTTCCCCAAAGTTTGCAGTTTTACTGCCAATCCATTGCAGTGCCCAGTCTGCC 67153 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 |||||||||||||| || | ||||| || ||||| || Sbjct 67152 TTTTTCTTTACACATGGTAAAGTTTCAATTGCATTGAA 67115 >seq22323 Length=191951 Score = 89.7 bits (98), Expect = 7e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 169535 TTATGACTCCTATCAATCCTATGTTGGCCGAATCATGCGATTCTGTTAACAAGGCATTTA 169594 ||||||| || || ||| |||||||| ||| | || | || ||| | | ||| | | Sbjct 187107 TTATGACGCCAGTCCTTCCAATGTTGGCTGAAGCTTGTAAATCAGTTGAAATGGCTATGA 187048 Query 169595 AAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGACGGTGAACGAGTGCAAGTTC 169654 | |||| ||| ||| ||||| | ||| | |||||||| |||||||| |||||||||| Sbjct 187047 AGAAATGTCCGAATGGCATGTTCTCTGAAATAAAATATGATGGTGAACGGGTGCAAGTTC 186988 Query 169655 ATAAAAATAATAACAACTTTGCCTTCTTTAGTAGAAATATGAAACCAGTTTTACCACATA 169714 ||||||| | | ||| | |||| | || | || |||||| | | || | Sbjct 186987 ATAAAAAAGGTTCAGAATTTAAATACTTTTCTCGAGCCTTAAAGCCAGTTATGGCCCACA 186928 Query 169715 AAGTTGATTATCTCAAAGAATACCTTCCTAAAGCATT 169751 |||| || || | || || || || ||||||||||| Sbjct 186927 AAGTCAATCATTTTAAGGAGTATCTACCTAAAGCATT 186891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712395510710400