Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20glaucus_20[genbank_20GCA_5F000931545.1_202015-02-23] 60,470 sequences; 374,815,656 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33159 159 8e-34 seq27463 154 4e-32 seq18898 150 4e-31 seq28415 147 5e-30 seq33871 141 2e-28 seq36087 131 4e-25 >seq33159 Length=163697 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || ||||| || || ||||| | ||||||||| |||||| Sbjct 97251 CAGATTTTTGTTAAAACACTAACAGGGAAGACTATCACATTAGAGGTGGAACCATCAGAC 97310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||| ||||| || || ||||| || || || || |||||| Sbjct 97311 ACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGATCAGCAA 97370 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || |||||||||||||| | || ||| |||| || || | Sbjct 97371 CGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCCGACTACAATATT 97430 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| ||||| || |||| Sbjct 97431 CAAAAAGAATCTACACTTCA-CTTG 97454 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || || || |||||||| || || ||| || || Sbjct 97479 CAAATCTTTGTGAAGACCTTGACGGGTAAGACCATCACCCTAGAAGTTGAACCTTCGGAT 97538 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| || || ||||| || ||||| || || || ||||||||| Sbjct 97539 ACCATCGAGAATGTCAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAA 97598 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||| | ||||||||| | || || | || |||||| || Sbjct 97599 CGGTTGATCTTTGCTGGCAAGCAGTTAGAAGATGGACGCACACTCTCAGACTATAACATC 97658 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || ||||| ||| Sbjct 97659 CAGAAGGAGTCCACACTCCAT 97679 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || || ||||| ||||| || || || || ||| ||| Sbjct 97935 CAGATCTTCGTAAAAACCTTGACTGGTAAAACCATCACTCTGGAAGTCGAGCCCTCGGAC 97994 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || || |||||||| ||||| || || || |||||||| Sbjct 97995 ACCATTGAGAATGTGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 98054 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || ||||| ||||||||| | || || | || || ||| || Sbjct 98055 AGGTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGCACACTCTCTGACTACAACATC 98114 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 98115 CAGAAGGAGTCTACCCTTCAT 98135 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || || || |||||| | |||||||| || ||| Sbjct 96795 CAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCTTGGAGGTGGAGCCTTCGGAC 96854 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| |||||||| || || || || || |||||||| Sbjct 96855 ACAATTGAAAATGTTAAAGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 96914 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| |||||||| || ||||| | || || | || || ||| || Sbjct 96915 AGGTTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACACTCTCTGACTACAACATC 96974 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 96975 CAGAAGGAGTCTACCCTTCA-CTTG 96998 Score = 91.5 bits (100), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || ||||| ||||| | || || || || || Sbjct 97707 CAGATCTTTGTAAAAACACTGACTGGTAAAACCATCACATTGGAAGTTGAGCCTTCTGAT 97766 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||| || || || || || |||||||| Sbjct 97767 ACTATTGAAAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 97826 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || ||||| ||||||||| | || || | || || ||| || Sbjct 97827 AGGTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGCACACTCTCAGACTACAACATC 97886 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 97887 CAGAAGGAGTCTACCCTCCA-CTTG 97910 >seq27463 Length=372575 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || ||||| || || | ||||| ||| ||| ||| Sbjct 145862 CAGATCTTCGTTAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTGAC 145803 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| |||||||| || || || || || |||||| Sbjct 145802 ACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAA 145743 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||| | ||||||||| | ||| | | || || ||| || Sbjct 145742 AGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTTTGTCGGACTACAACATC 145683 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||||||||| || | |||||||| || Sbjct 145682 CAGAAGGAATCAACACTTCACTTGGTTTTGAGGCT 145648 >seq18898 Length=402 Score = 150 bits (166), Expect = 4e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| ||||| || || || ||||| || |||||||||||||| ||| Sbjct 306 AAAATGC---AAATTTTTGTGAAGACCCTAACGGGAAAGACAATCACCCTCGAGGTAGAA 250 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||| ||||| || || || ||||| || ||||| || || || ||||| Sbjct 249 GCCTCTGACACTATCGAAAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATTCCTCCT 190 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || || ||||| || || ||||| |||||||| | |||||| |||| Sbjct 189 GACCAGCAGCGTCTGATATTCGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGAC 130 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || |||| || ||||| || || || |||| Sbjct 129 TACAATATCCAGAAGGAATCTACCCTTCA-CTTG 97 >seq28415 Length=359998 Score = 147 bits (162), Expect = 5e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||||||||| || ||||| |||||||||||||| ||| ||| || Sbjct 102359 CAGATTTTCGTGAAAACTCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCCTCGGAT 102300 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||||| |||||| |||||||||||||| || |||||||||||||||||||| Sbjct 102299 ACCATCGAGAATGTCAAAGCTAAGATTCAGGACAAGGAGGGAATCCCTCCGGACCAGCA 102241 >seq33871 Length=3159 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || ||||| |||||| | || |||||| |||||| Sbjct 3122 CAGATCTTCGTTAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTGGAACCTTCAGAC 3063 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || || |||||||| ||||| || || || |||||||| Sbjct 3062 ACCATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 3003 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || ||||| ||||||||| | || || | || || ||| || Sbjct 3002 AGGTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGCACACTCTCTGACTACAACATC 2943 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 2942 CAGAAGGAGTCTACCCTTCA-CTTG 2919 >seq36087 Length=321 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || ||||| | || ||||| || ||| Sbjct 2 CAGATCTTTGTGAAAACGCTTACGGGCAAGACCATCACGTTGGAAGTGGAGCCATCTGAC 61 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || ||||| || || ||||| || |||||||| Sbjct 62 ACTATTGAAAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAG 121 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || ||||||||||| ||||| | ||||| | || || || || Sbjct 122 CGACTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTCTCTGACTACAATATC 181 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || |||||| | ||||||||||| Sbjct 182 CAGAAGGAGTCCACTCTGCATTTAGTTTTGAGACT 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202798582921180