Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq48925 554 5e-153 seq48068 114 2e-20 seq63168 86.0 7e-12 >seq48925 Length=1097090 Score = 554 bits (614), Expect = 5e-153 Identities = 1209/1792 (67%), Gaps = 36/1792 (2%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | |||||| ||||| | | | || || || | |||| ||| |||||||| Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| | ||||| ||||||| || || || | ||| |||| | || Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | ||| || || | ||||||||||| || || || ||||| ||||| || ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 ||||| || | || || || ||| ||||||| |||||||| ||||| || |||||| Sbjct 840005 ATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT-AATATC 840063 Query 53038 TTCTGGAA---GGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 || ||| | | | |||| ||||| || ||| | || ||| |||||| || Sbjct 840064 TTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCAT 840123 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 || || | |||||| | | || ||||| |||| | | ||| | ||||| || || Sbjct 840124 GTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTG 840183 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 |||||||||||||| || | | |||||| || || ||||||| | ||||| Sbjct 840184 GAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTC 840243 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA-AACT-- 53271 ||||||||| || ||||| || || || || || ||||| || || | ||| || | Sbjct 840244 ATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTA---ATAGAAGTGA 840300 Query 53272 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||| | || || ||||| | ||||||||||| ||| ||| ||||| ||||| Sbjct 840301 ATTGCGGAGTCC--ATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCA 840358 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 53388 | || ||| | || || | || || | || |||| | Sbjct 840359 GTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACT-TCCTTC 840417 Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 ||||||| || ||| || || | || ||||||||||| || |||||||| ||||| Sbjct 840418 ATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTA 840477 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||| |||||||||||||| | | || || | |||||| || ||| ||||| Sbjct 840478 ATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAAT 840537 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | || | ||| | || ||||| ||||| || |||||||| |||||||| || | Sbjct 840538 GCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACG 840597 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 | | ||||| ||| ||||| || | || ||| |||||| ||| ||||||||||| || Sbjct 840598 CATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAG 840657 Query 53629 GTT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCT- 53686 ||| | || | | ||||| || || |||| || | ||| | || | |||| Sbjct 840658 GTTCTGTGTGATTATCTTTG-TGACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTT 840716 Query 53687 -ATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 ||| |||||| | ||||| ||||| || || | ||||||||| || || |||| || Sbjct 840717 CATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTG 840776 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | |||| | || || ||||| | |||||| || || ||||| || | ||||| || Sbjct 840777 AAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTT 840836 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 ||||||| ||| | ||||| | ||| ||||| || ||| |||| || || ||||| | | Sbjct 840837 GATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTT 840896 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGC-----CTTTATTATAGATTTGTATCT 53919 | | |||||| || |||||||| | | |||| ||| ||| | | |||| Sbjct 840897 GTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTA-ACA----AATCT 840951 Query 53920 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 ||||| ||| ||| | ||||||| |||||| || ||||||||| || | | Sbjct 840952 TTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCAAG 841011 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 || || || |||| |||||||| | |||| | | || | | || |||||||| Sbjct 841012 ACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCAT 841071 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 ||| | ||| || ||||| | || ||||| ||||| | || || || || || Sbjct 841072 AAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCC 841131 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||||||||| ||||| | ||| | | || |||||| ||||| ||||| | ||| || Sbjct 841132 AGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAAT 841191 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | |||| || ||||| || ||||| || || | || || || || ||||| || Sbjct 841192 AGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTA 841251 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 |||||||||||||| | | |||||||| | ||||| || || | || ||| | || Sbjct 841252 CACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACC 841311 Query 54280 ACTGGCACGAATATTACTAA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | || | || | || ||| || ||||| || || || ||| |||||||| | Sbjct 841312 TTTTGCCCTGATGCAATGAACATGA-AGGCCTATACCACCAGCAGATTTTGAGATTAAGG 841370 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | ||| |||||| || ||||| || ||||| || |||||||| |||| | || | Sbjct 841371 CACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGA 841430 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || ||| | ||| | | |||| | || ||||| || ||| || || | Sbjct 841431 AGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAG 841490 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGA 54517 |||| |||||||||| | | |||||| || || || ||||| || || || || | Sbjct 841491 TAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCG- 841549 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 || ||||| | | ||| ||||| | ||| ||||||||||||||| | |||| Sbjct 841550 TGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAATCT 841601 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || |||||||||||||||| ||| || | |||| ||| || ||||| | ||||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | |||||| ||||| || |||| || | | | |||||||||| || ||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 54899 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 54940 |||||||| || || || |||||| |||| | |||| Sbjct 842894 GTTACTCCCGAGTAAATACCACTGATAACTTTCAATGTTATT 842935 >seq48068 Length=254185 Score = 114 bits (126), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 24400 TAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTT 24459 ||| ||||||||||||||| | ||||| || || || | ||||| || || |||| Sbjct 224871 TAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTT 224812 Query 24460 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTA 24519 ||||||| || || | || || || || || |||||| ||||||| ||| ||| Sbjct 224811 GAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTA 224752 Query 24520 AATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 |||| ||||| ||||| || ||| || |||||||| ||||| |||||||| ||||| Sbjct 224751 AATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAA 224694 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || ||| ||| | || ||| || || || || ||||||| ||| ||||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || || || ||||| ||||||||||| |||||||| || || ||||||| Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 24331 ||| | |||||| || || |||||| || ||||| | | ||||| || Sbjct 225294 CAACTATTCTTTCCCC--AAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTC 225237 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||||||| |||||||| || | || || | ||||| || Sbjct 225236 TGCCTTCTTCTTTACACATGGTAAAGTTTCAACTGCATTGAA 225195 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||| ||||| ||||| ||||| || || || || |||||||||||||| | | Sbjct 224550 TTGGATAAATCAACTTCCTCCACAGTCCAGAACGAAGCTTCAGCCTTTTTATACATTTGC 224491 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || ||| ||||||| || ||||| || || || Sbjct 224490 CAAATATCAGGATATTGGATAGGAAAGATGACGAA 224456 >seq63168 Length=2713828 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 147346 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 147405 || |||||||| ||| ||||| | || || | | ||| | || |||| |||| ||| Sbjct 1029513 CCTATGTTAGCTGAAGCGTGTAAGTCGGTAGAAATGGCTATGAAGAAATGTCCAAATGGA 1029454 Query 147406 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAA 147452 |||||| | ||| ||||||| ||||| |||||||| ||||||||||| Sbjct 1029453 ATGTTTTCAGAAATCAAATATGATGGAGAGAGAGTGCAAGTTCATAA 1029407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593252656415760