Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq18715 275 5e-69 seq61578 111 1e-19 seq48925 87.8 2e-12 >seq18715 Length=1377716 Score = 275 bits (304), Expect = 5e-69 Identities = 670/1000 (67%), Gaps = 40/1000 (4%) Strand=Plus/Minus Query 105520 ATTTGACGATAATCTACAACACCGTCCTCCCACGTGCCC--GAC----CCCGGCCCGTTG 105573 |||| | |||||| || |||||||| | ||| || || ||| || | | ||||| Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 105574 CCAGTGCCGGAAAAATAG-TTGTCATT--CGTATAATTTGTTA-CGCCGGTCCAGCCGCG 105629 |||||| ||| | |||| ||| |||| |||| | | ||||||||||| || Sbjct 1370906 CCAGTG-------AATGGATTGTTATTTTCGTAG---TTGTGAACCCCGGTCCAGCCTCG 1370857 Query 105630 GCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTTCAGTAACGC 105689 |||||||| || || ||||| | || || || || | ||||||||| || || Sbjct 1370856 TCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATA 1370797 Query 105690 ATCGACAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGT 105749 | ||| | ||| || || || || | | ||||||| || ||||| | | Sbjct 1370796 TTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGG 1370737 Query 105750 TGTTTGGTAGCCCAAATCCGTGTTT-GACCAAGCCCCTTTAAAATCGTAACTCATGAGAA 105808 ||| || | | || | || || ||||| || ||||||||||| ||||||||||| | Sbjct 1370736 TGTCTGAT-GACCGAGGGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGA 1370678 Query 105809 ATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAAC 105868 | || | | | | || || || ||| ||| | ||||| |||||| || | | Sbjct 1370677 AAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATC 1370618 Query 105869 CCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCGCTTCG---AGGTCGT 105925 | || || |||||| || | ||||| | | ||||| | |||| ||||||| Sbjct 1370617 CAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCT---CTTCAGAAAGGTCGT 1370561 Query 105926 CTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTTTGGCGTCACCGTCCGCAT 105985 | |||| | |||| |||| || || || ||| | || |||||| | Sbjct 1370560 TCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAA------CATCTCCGTCCTTAG 1370507 Query 105986 CGC--CCAACGAC-GGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACAC 106042 || || | | | |||||||| || || ||||| || || ||||||||||| || |||| Sbjct 1370506 GGCTTCCTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACAC 1370447 Query 106043 CGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTT 106102 |||| ||||| ||||| | | ||||| || || || ||||| || || ||| | Sbjct 1370446 CGTCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCT 1370387 Query 106103 TTTCAACATCG-TGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGA 106161 | || ||| || | || | | || || || | |||||||||||||| || ||||| Sbjct 1370386 TCTCTTTGTCGGTGAAGAAGA-AGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGT 1370328 Query 106162 AGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTA 106221 |||||||| | | || | ||| ||| | ||||| ||| ||||| |||||||| Sbjct 1370327 AGAATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTG 1370268 Query 106222 TACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCG 106281 || || || ||||| | |||| || || || || || || | ||||||||||| ||| Sbjct 1370267 TATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCG 1370208 Query 106282 TGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTT 106341 ||||| | |||||||||||||||||| || |||| |||| ||| | || || || || Sbjct 1370207 TGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTG 1370148 Query 106342 CCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCA 106401 || ||| || | |||||| || || ||||| ||||| || || |||||||| Sbjct 1370147 CCTTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCG 1370088 Query 106402 TACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTAC 106461 ||||| | || | | ||| || | || || || || || || || | ||| Sbjct 1370087 TACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAA 1370028 Query 106462 ACACCCCACTCAACAAAGTACGCAGCGACAATTTTATCCT 106501 |||||||| |||||||||||||| |||||| ||| |||| Sbjct 1370027 ACACCCCATTCAACAAAGTACGCTCCGACAACTTT-TCCT 1369989 >seq61578 Length=3623949 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || || || || || ||||| ||| |||| ||||| || Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || ||| | |||| ||||| || ||||||||| | ||| ||| || Sbjct 3476035 GACACTATGGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3476094 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | |||||||| || |||||||| |||| ||| || | ||| | ||||||||| Sbjct 3476095 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCT--CCGATTACA 3476152 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || |||||||| |||||||||||| ||||| Sbjct 3476153 ACATCCAGAAGGAGTCTACTCTTCACTTGGTG 3476184 >seq48925 Length=1097090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || |||||| || ||| | ||||| | ||||| |||||||| || || ||| | Sbjct 515173 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 515232 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | || | || |||||| || ||||| || | || ||| Sbjct 515233 CTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGA 515292 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| |||||| | ||||| || |||||||| | |||||| || || |||| || Sbjct 515293 TCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTA 515352 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||||||||| || |||||| ||||||| | | |||||||| Sbjct 515353 CAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 515403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428006142060485