Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18715 280 1e-70 seq9460 221 1e-52 seq26895 107 2e-18 seq23042 105 6e-18 seq61578 98.7 8e-16 >seq18715 Length=1377716 Score = 280 bits (310), Expect = 1e-70 Identities = 566/830 (68%), Gaps = 21/830 (3%) Strand=Plus/Minus Query 102164 ACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACGATGAGTTTGT--GGGCCGCTA 102221 || || ||||| || || |||||||| || || ||||| | | || | ||| | | Sbjct 1370873 ACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTG--A 1370816 Query 102222 CGCCTTGGCCCGTGAGCAACT---TCACGGCGTGGTCGGTGGTGTACAGCTCGTTGGCGT 102278 ||||||| | ||||| | |||| | ||| ||||| || || |||| || Sbjct 1370815 CGCCTTGAGCA---AGCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGT 1370759 Query 102279 TCCAACTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGTG-TTGGACCACGCGCCC 102337 ||||| || ||||| |||| ||||| | | || | || || ||||| ||||| Sbjct 1370758 TCCAAGCAGGAGCGTAAAGCGGTGTCTGAT-GACCGAGGGTGTCATTAGACCAGGCGCCT 1370700 Query 102338 TTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTC 102397 |||||||| |||||||||||||| || | ||| | | | | |||||| || ||| | Sbjct 1370699 TTAAAATCATAACTCATGAGGAAAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCG 1370640 Query 102398 ACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTT---G 102454 ||||| ||| || || | || | |||||| ||| ||||||||||| |||| | Sbjct 1370639 ACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCG 1370580 Query 102455 TTCGTTTGCAGCTGCAGTTCGTCCAGCATGGCGCGCAACTCTTTCAGCAAAACAAGGTAC 102514 || || ||| || |||| || ||| | ||||| || |||| || ||| ||| Sbjct 1370579 GTCTCTT-CAGAA--AGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAA 1370523 Query 102515 GTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAAC 102574 || |||| || | | || || | ||||| || ||||| ||||| || || Sbjct 1370522 ACATCTCCGTC---CTTAGGGCTTCCTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAAT 1370466 Query 102575 TCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGAT 102634 ||||||||||| || || |||||||| |||||||| | | ||| ||||| || || Sbjct 1370465 TCCCAATCGATATCAACACCGTCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAA 1370406 Query 102635 TCGACAAACACGCGCCGCTTGTCCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTC 102694 || || || | | ||| || |||| | ||| |||| || |||| || ||| Sbjct 1370405 TCAACGAAGCGACCTCTCTTCTCTTTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTC 1370346 Query 102695 CAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAAC 102754 ||||| || ||||| || || ||||| | | || | || | ||| | ||||| | Sbjct 1370345 CAGCCTCCGATGGAAGGTAGAATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGC 1370286 Query 102755 TGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGT 102814 || ||||||||||||||||| || || ||||| | || | ||||| || ||||| || Sbjct 1370285 TGACCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGA 1370226 Query 102815 ATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGC 102874 | ||||||||||||||||| |||| || || || ||| ||||||| |||| || || Sbjct 1370225 AGAGCGGCCCACGGGTCGTGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGT 1370166 Query 102875 TGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCG 102934 || || |||| |||||||| || ||| | |||||| | |||||||| ||| Sbjct 1370165 TGAAGAGCTTGGAAACTGCCTTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCG 1370106 Query 102935 CAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCAC 102984 ||||| || ||||| ||||||| ||||| | ||| || || | ||| || Sbjct 1370105 CAAATAGGAATGAAACCGTACAAAAGATGCGTCAGATTAGGAATCGGTAC 1370056 >seq9460 Length=1391182 Score = 221 bits (244), Expect = 1e-52 Identities = 548/822 (67%), Gaps = 96/822 (12%) Strand=Plus/Minus Query 28810 GTACATGCGCACCGCTTTGTCTAACTGACCGC-GGCAAACGGGGCACGTGGTCA-CGCCC 28867 ||||| |||||||| || ||| | |||| |||| | |||||| || | || | Sbjct 539400 GTACAGCCGCACCGCGTTCGTGAAC-GTCCGCCGGCACATCGGGCACTTGTCCGTCGACA 539342 Query 28868 GCAGCGCACTTGCCGCACGCCACCACGTGCCCGCAGGGCACAAAGCACACGGTCTTTTCG 28927 || ||||||||| |||||||||||||||||||||| ||||| ||||||||| | || Sbjct 539341 GC-GCGCACTTGGCGCACGCCACCACGTGCCCGCACGGCACGAAGCACACGTTGCGCTCC 539283 Query 28928 GCGCCGAGGCAAATCTTGCACAGC--CG-GTCATCCGCCAC---CTCCGCTTCAACGGC- 28980 | || ||| |||||||||||| || ||| ||| | || |||| ||| || | Sbjct 539282 TCCGCGTAGCATATCTTGCACAGCTTCGAGTCCTCCACGACGTTCTCCTCTTTTTCGCCT 539223 Query 28981 ----------CGG--CCGCTCAATG-TGC---GGT----TC-----GTTGTCCGCGTCGC 29015 ||| || | | | || ||| || ||| | | || | Sbjct 539222 TTACTCTTTGCGGGATCGGTGGACGCCGCGAGGGTGGACTCCCTCTGTTCTTTGGGTGCC 539163 Query 29016 GA-ACCACACACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGC 29074 || | | || ||||| | |||||| || || |||||||||| || || ||| | Sbjct 539162 GAGATGGCGCAGGCCTCCGACATCACTTTTTGTACGTAGTCGCGGCCTTTCACCAGCTGA 539103 Query 29075 ACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCC 29134 ||||| ||||||||||| ||||||| ||||| |||| |||||| |||||||| ||| Sbjct 539102 ACGTAAGCGCAGCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGGACGTCGTCGTTCTCC 539043 Query 29135 CAATCCTTCAGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAA 29194 || ||||| || |||||||||||| | ||||| ||| |||||||| ||||| ||||| Sbjct 539042 CAGTCCTTGAGGCCGCCGTCGCAGTAGAAGCATTTCGTTTTGTCGCCGTGGCCGGTGTAG 538983 Query 29195 AAGAATCCGGCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCA 29254 ||||| |||||||| |||| ||| || || |||| || | || ||||| || Sbjct 538982 AAGAAGCCGGCCTCCGCCAGCTCCTCTGGTTTCTGTCGCATGCACCGCGGCCAGTCTTTG 538923 Query 29255 AAGGTGCGCAAACGCGCGGCTTCCGTGGCATACTGCGGGTG--CGCGGCCG-----CCGA 29307 |||||||| | |||||| || || | ||| || | ||||| || ||||| || Sbjct 538922 AAGGTGCGGAGACGCGCCGCCTCGGAGGCGTATCGGGGGTGCACGGGGCCGGGCATGCGC 538863 Query 29308 CCGCGC--------CGGCGGGGCGCG------------GTCGTG--TGGCG--------- 29336 || || ||||||||||| |||| | |||| Sbjct 538862 ACGGGCGTGGCGCTGGGCGGGGCGCGCACGCCGCACTCGTCGCGGCCGGCGGCGCTCGGG 538803 Query 29337 -TGTCGTGCG---CGTT-------GTTGCG--------CACAAACGGACACTGCGGCGCC 29377 | ||| ||| |||| || ||| || ||| || |||||||| ||| Sbjct 538802 CTCTCGAGCGGCACGTTGCCGGCGGTCGCGTGCCGCCTCAGAAAGGGGCACTGCGGGGCC 538743 Query 29378 CACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTTACCCAATTCGTAATCTCTACCTTG 29437 ||||||| ||||||| | | |||||||||||| ||||| | | || || || || Sbjct 538742 CACCGCTGGTGGTCCTTAGCGGGGTCGTCGCCCTCCACCCAGCGCATGATTTCGACTTTA 538683 Query 29438 CAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAGTAGTAGAACCCGCTGGCGGCCATG 29497 ||||| |||||||| ||||||||||||||||| | ||||||||| ||| | ||| | | Sbjct 538682 CAAAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTAGTAGAAGCCG-TTGCGCGCTAG 538624 Query 29498 CGGCTC-GGCTCCAAAAACTGGACGGGCCAATTGGTGTACGT 29538 | |||| ||| | ||| | |||||||| ||| | |||| Sbjct 538623 CTGCTCGGGCGAAAGAAAGTCCACGGGCCACTTGTCGAACGT 538582 >seq26895 Length=1000185 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||| |||||||||||||| ||| | ||||||| ||| ||||| || ||| | | Sbjct 288911 GTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTTGTT 288852 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 |||||||||||| | || || || ||||| || || || |||| || || |||||||| Sbjct 288851 GGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCAC 288792 Query 23931 GTGAAAACCGTG 23942 ||||||||||| Sbjct 288791 ATGAAAACCGTG 288780 >seq23042 Length=5275587 Score = 105 bits (116), Expect = 6e-18 Identities = 137/184 (74%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 38681 AACGCCGCCGACTCGCCGTACCGCGTGCTGCTCATGTCCATCAAGTGCGG-CGGCGTGGG 38739 |||| | ||| |||||| |||||| |||| | || | | ||||| ||| ||||| Sbjct 2566200 AACGACCCCGCGTCGCCGGTGCGCGTGATGCTGCTCTCGCTGAC-TGCGGGCGGAGTGGG 2566142 Query 38740 GCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGGAACCCGCAAAT 38799 ||| |||||| ||||| || ||| | | ||||||| ||||||||||||||||| | Sbjct 2566141 GCTCAACCTGTGCGGCGCCAGTCACCTGCTGCTGCTGGACCCGCACTGGAACCCGCAGCT 2566082 Query 38800 TGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCG-CACGT--ACGT 38856 |||| ||||||||| |||||| | ||||| |||| ||| | ||| ||||| |||| Sbjct 2566081 GGAGCAGCAGGCGCAGGACCGCGTGTACCGCGTGGGGCAG---ACGCGCCACGTGCACGT 2566025 Query 38857 GTAC 38860 |||| Sbjct 2566024 GTAC 2566021 >seq61578 Length=3623949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | ||||| || ||||| || |||||||| ||||| | | Sbjct 3474438 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474379 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||||||||||||| || | || | |||||||||||| ||| Sbjct 3474378 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 3474319 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || || ||| || | Sbjct 3474318 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACT 3474259 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| || || || |||||||| || ||||| Sbjct 3474258 TCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || ||||| ||||| ||||||||||| | Sbjct 3475973 CCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGAT 3475914 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||| ||||||||| || | ||||| | |||||||| ||| Sbjct 3475913 AGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGG 3475854 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||| || ||| || | ||| ||| || ||| || | Sbjct 3475853 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACT 3475794 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| |||||||| || || || ||||| || || ||||| Sbjct 3475793 TCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | ||||| || ||||| || |||||||| ||||| | | Sbjct 3474210 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474151 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||||||||| ||| || | || | |||||||||| | ||| Sbjct 3474150 AATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGG 3474091 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || || |||||| Sbjct 3474090 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 3474031 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || || || || || || || ||||||||| Sbjct 3474030 TCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTTG 3473980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | ||||| || ||||| || |||||||| ||||| | | Sbjct 3474666 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474607 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||| ||||||||| || | || | ||| |||||||| ||| Sbjct 3474606 AATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGG 3474547 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || || ||| || | Sbjct 3474546 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACT 3474487 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || || || |||||||| || ||||| Sbjct 3474486 TCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421934021752892