Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq18715 279 4e-70 seq61578 109 5e-19 >seq18715 Length=1377716 Score = 279 bits (308), Expect = 4e-70 Identities = 666/996 (67%), Gaps = 32/996 (3%) Strand=Plus/Minus Query 97287 ATTTGACGATAATCTACAACACCGTCCTCCCACGTGCCC--GACA----CCGGCCCGTTG 97340 |||| | |||||| || |||||||| | ||| || || |||| | | | ||||| Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 97341 CCAGTGCCGGAAAAATAG-TTGCCATT--CGTATAATTTGTTA-CGCCGGTCCAGCCGCG 97396 |||||| ||| | ||| ||| |||| |||| | | ||||||||||| || Sbjct 1370906 CCAGTG-------AATGGATTGTTATTTTCGTAG---TTGTGAACCCCGGTCCAGCCTCG 1370857 Query 97397 GCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTCCAGTAACGC 97456 |||||||| || || ||||| | || || || || | ||||||||| | || || Sbjct 1370856 TCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATA 1370797 Query 97457 ATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGT 97516 | ||| | | | || || || || | | ||||||| || ||||| | | Sbjct 1370796 TTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGG 1370737 Query 97517 TGTTTGGTAGCCCAAATCCGTGTTT-GACCAAGCCCCTTTAAAATCGTAAGTCATGAGAA 97575 ||| || | | || | || || ||||| || ||||||||||| ||| ||||||| | Sbjct 1370736 TGTCTGAT-GACCGAGGGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGA 1370678 Query 97576 ATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAGC 97635 | || | || | | || || || ||| ||| | ||||| |||||| || | | Sbjct 1370677 AAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATC 1370618 Query 97636 CCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCACTTCG---AGGTCGT 97692 | || || |||||| || | ||||| | | ||||| | |||| ||||||| Sbjct 1370617 CAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCT---CTTCAGAAAGGTCGT 1370561 Query 97693 CTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTGGCGTCACGCTCCGCAT 97752 | |||||| |||| || | || || || ||| | |||| || | Sbjct 1370560 TCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTC---CTTAGGGC 1370504 Query 97753 CGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCAT 97812 || || |||||||| || || ||||| || ||||||||||||| || ||||| | Sbjct 1370503 TTCCTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGT 1370444 Query 97813 CAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTT 97872 | || || ||||| | | | ||| || || || || || || || ||| || | Sbjct 1370443 CGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCT 1370384 Query 97873 CAACGTCGTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAA 97932 | |||| | ||| |||| || || | |||||||||||||| || ||||| |||| Sbjct 1370383 CTTTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAA 1370324 Query 97933 TTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACG 97992 |||| || | || | ||| ||| | ||||| || ||||| ||||||||||| | Sbjct 1370323 TTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATG 1370264 Query 97993 GTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGA 98052 |||| ||||| | |||| ||||| || || || || | ||||||||||| ||||| | Sbjct 1370263 GTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAA 1370204 Query 98053 TGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGG 98112 | | |||||||||||||||||| || ||||| |||||||| ||||||| ||||| || Sbjct 1370203 TAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTT 1370144 Query 98113 GTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACA 98172 || || | |||||| || || ||||| ||||| || || ||||||||||||| Sbjct 1370143 CGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACA 1370084 Query 98173 ACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACAC 98232 | | |||| | ||| || | || || || || || || | | ||| |||| Sbjct 1370083 AAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACAC 1370024 Query 98233 CCCACTCGACAAAGTACGCAGCGACAATTTTATCCT 98268 |||| || ||||||||||| |||||| ||| |||| Sbjct 1370023 CCCATTCAACAAAGTACGCTCCGACAACTTT-TCCT 1369989 >seq61578 Length=3623949 Score = 109 bits (120), Expect = 5e-19 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || || || || || ||||| ||| |||| ||||| || Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 25095 GAGACGGTGGCCGATC--TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 || || ||| || | | |||| |||| | || ||||||||| | ||| ||| | Sbjct 3476035 GACACTATGGA-GAACGTTAAAGCTAAAA-TCCAAGACAAAGAAGGTATCCCCCCAGACC 3476092 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTA 25210 | ||| | |||||||| || |||||||| ||||| ||| || | ||| | ||||||| Sbjct 3476093 AGCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCT--CCGATTA 3476150 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || || ||||| |||||||||||| ||||| Sbjct 3476151 CAACATCCAGAAGGAGTCTACTCTTCACTTGGTG 3476184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410480448850418