Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18715 172 6e-38 seq48925 134 1e-26 seq61578 129 6e-25 seq51658 91.5 2e-13 seq48068 89.7 5e-13 >seq18715 Length=1377716 Score = 172 bits (190), Expect = 6e-38 Identities = 302/433 (70%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 65531 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTC 65590 ||||| || ||||| ||||| || || ||||| || | || | |||||||| | |||| Sbjct 1370492 GGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTC 1370433 Query 65591 CACGTCTGCAGAAACTcgcgcgccgactcgacgaacgcgcggcgcgcgct-cgc---gTC 65646 || || | ||||| || | | || || ||||| ||| | | | || | | ||| Sbjct 1370432 CAGGTTAGAAGAAAATCTTTCACAGAATCAACGAA---GCGAC-CTCTCTTCTCTTTGTC 1370377 Query 65647 G-TGCATGTGATAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCA 65705 | || | || | || ||||||| || |||||||| |||||||| || || | | Sbjct 1370376 GGTGAAGAAGA-AGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAA 1370318 Query 65706 GGTGCGGGTGCGCCTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGC 65765 | | || || | |||| | ||||||||| || |||||||| ||||| || || Sbjct 1370317 GTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCAT 1370258 Query 65766 TCCACGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCA 65825 |||| | | || ||||| || |||||||| | || |||||||||||||| | | | Sbjct 1370257 TCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAA 1370198 Query 65826 GCTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGG 65885 ||||| || |||||||| ||| || || || || || | ||| ||||| |||| Sbjct 1370197 CTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCT 1370138 Query 65886 ACTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGAT 65945 ||| | ||||||||||||||||| || ||||| || || | ||| ||||||| |||| Sbjct 1370137 CCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGAT 1370078 Query 65946 GCGTGAGGTTGGG 65958 |||| || || || Sbjct 1370077 GCGTCAGATTAGG 1370065 >seq48925 Length=1097090 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||||||||| |||||||| |||||||| || | || || ||||| Sbjct 515173 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 515232 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | ||| | || | ||||||| |||||||||||||| || | || Sbjct 515233 CTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGA 515292 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | |||| ||| ||||||||| | || || | || || | |||||| Sbjct 515293 TCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTA 515352 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||||||||||| | || || || | |||||| Sbjct 515353 CAACATCCAGAAGGAATCAACACTTCACTTGGTGTTG 515389 >seq61578 Length=3623949 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| |||| || ||| | | Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | |||| | ||| |||| | | |||||||| || |||||| | ||||| Sbjct 3476035 GACACTATGGAGAACGTTAAAGCTAAAA-TCCAAGACAAAGAAGGTATCCCCCCAGACCA 3476093 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||||||| |||| || | || || ||| ||| ||||| Sbjct 3476094 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAA 3476153 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| | || || || | ||| | || | | ||||||| Sbjct 3476154 CATCCAGAAGGAGTCTACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGCG 3476203 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || |||||||||||||| | || || ||| || | Sbjct 3474212 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCG 3474271 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||||| |||||||||||| | |||||| Sbjct 3474272 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474331 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| |||||||||||||| || | ||||| | ||||||||| Sbjct 3474332 CAGAGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAAC 3474391 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| ||| | || |||||| |||| Sbjct 3474392 ATTCAGAAAGAGTCAACCCTGCATTTAGT 3474420 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | |||||||| ||||||||| | || || || | Sbjct 3473981 AAAATGCAGATTTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTAGAGGTGGAGCCT 3474040 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | ||||| |||||||||||| | | | Sbjct 3474041 TCGGACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGCC 3474100 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| ||| ||| |||||||||| || | ||||| | |||||| Sbjct 3474101 CAGCAGAGATTGATCTTCGCCGGCGAACAGCTGGAAGATGGACGCACATTGTCTGACTAC 3474160 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| ||| | || |||||| |||| Sbjct 3474161 AACATTCAGAAAGAGTCAACCCTGCATTTAGT 3474192 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || || ||| || | Sbjct 3474440 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCG 3474499 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||||| |||||||||||| | |||||| Sbjct 3474500 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474559 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| ||||||||| |||| || | ||||| | ||||||||| Sbjct 3474560 CAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAAC 3474619 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| ||| | || |||||| |||| Sbjct 3474620 ATTCAGAAAGAGTCAACCCTGCATTTAGT 3474648 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || ||| |||| || ||| || | Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| |||| | | |||||||| || |||||| | ||||| Sbjct 3475807 GACACTATCGAGAACGTTAAAGCTAAAA-TCCAAGACAAAGAAGGTATCCCCCCAGACCA 3475865 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||||||| |||| || | || || || ||||| || Sbjct 3475866 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAA 3475925 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || ||| | || || || Sbjct 3475926 CATCCAAAAAGAGTCGACACTCCA 3475949 >seq51658 Length=184250 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || Sbjct 30295 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 30354 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||| | || |||| || || ||||| ||||| ||||| Sbjct 30355 TCGGACACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATCCCTCCGGAC 30414 Query 40807 CAGCA 40811 ||||| Sbjct 30415 CAGCA 30419 >seq48068 Length=254185 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||| |||| || || || || || ||||| || || || || ||||| || || Sbjct 224426 GAACCACTGTTGCGTGAAAATCCGCGGCGTTTCGTCATCTTTCCTATCCAATATCCTGAT 224485 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| |||||||| || || ||||||||||| || ||||| || || | Sbjct 224486 ATTTGGCAAATGTATAAAAAGGCTGAAGCTTCGTTCTGGACTGTGGAGGAAGTTGATTTA 224545 Query 116696 TCCAAGG 116702 ||||||| Sbjct 224546 TCCAAGG 224552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514812260555120