Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18715 242 3e-59 seq48925 131 1e-25 seq61578 118 9e-22 seq51658 87.8 2e-12 seq26895 82.4 7e-11 >seq18715 Length=1377716 Score = 242 bits (268), Expect = 3e-59 Identities = 351/493 (71%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 21581 GCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCG 21640 || |||||||| |||||||| || |||| ||| | ||||| ||||| || ||| Sbjct 1370005 GCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTACCGATT 1370064 Query 21641 CCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAAC 21700 || ||||| | ||| | | ||||| ||| | || || ||||||||||||||||||||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 21701 GACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGG 21760 ||| |||| | | |||||||| | || | ||||| || || || || Sbjct 1370125 GACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1370184 Query 21761 GCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGC 21820 | |||||||| || |||| ||||| ||||||||||| | || ||||| || ||||| Sbjct 1370185 GAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGGGA 1370244 Query 21821 GTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGG 21880 | || || ||||| ||||| |||||||||||||||||||| |||||| | | || Sbjct 1370245 CTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAACAA 1370304 Query 21881 GCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCATTT 21940 |||| ||| | ||||| | | | || ||||| || |||||||| ||||||| || Sbjct 1370305 GCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCCCTTC 1370364 Query 21941 TATCATATGCA-CGACGCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAAGAATTTCT 21999 | || | | || |||| || ||| | || | ||||| || |||| ||||| Sbjct 1370365 T-TCTTCTTCACCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGTGAAAGATTTTCT 1370423 Query 22000 GCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGCAAGGG 22059 || || |||||||||| ||||| || | ||||||||||| || || ||||| ||||| Sbjct 1370424 TCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAGGG 1370483 Query 22060 AGCCAACCCCGAC 22072 ||| ||||| ||| Sbjct 1370484 AGCTAACCCTGAC 1370496 >seq48925 Length=1097090 Score = 131 bits (144), Expect = 1e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | |||||||||||||| | ||| || || || || |||||||| ||| Sbjct 515405 TACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 515346 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | |||||| || ||| |||| | | |||||||| || | Sbjct 515345 ACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 515286 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||| |||||| |||||| ||| || | ||||| ||||| | | || | Sbjct 515285 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAA 515226 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 118744 |||| | || | ||||| || || || |||||||| || |||||||| | ||| Sbjct 515225 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTTA 515171 >seq61578 Length=3623949 Score = 118 bits (130), Expect = 9e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTG--CGCGTATCCT 118587 |||||||||| ||| ||||||||||| ||||| || | || |||||| || ||||| Sbjct 3475955 ACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGT--CTGATAGTGTACGACCATCCT 3475898 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | |||||| || ||| |||| ||||| ||||| || || || || || || |||||| Sbjct 3475897 CCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTT 3475838 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| |||||| | |||| ||||| | | || || |||| ||| | || | Sbjct 3475837 GGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCT 3475778 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || || || || |||||||| Sbjct 3475777 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| || || ||||| ||| || |||||||| || Sbjct 3474408 GTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTTGCCG 3474349 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || || || ||||||||||||||| || || ||| Sbjct 3474348 GCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTA 3474289 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||||| | || || || | || | |||||||| |||| || Sbjct 3474288 ACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTCAAGGTC 3474229 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 3474228 TTGACAAAGATCTGCAT 3474212 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| || || ||||| ||| || ||||||| || Sbjct 3474180 GTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTCGCCG 3474121 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| | || || ||||||||||||||| || || ||| Sbjct 3474120 GCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTA 3474061 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||||| ||| ||||| | ||| | || ||||| |||| || Sbjct 3474060 ACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTC 3474001 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 3474000 TTCACGAAAATCTGCAT 3473984 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || || |||||||||||| | || || |||||| Sbjct 3476184 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACCATCCTC 3476125 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || ||| |||| ||||| ||||| || || || || || || |||||| Sbjct 3476124 CAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTG 3476065 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| |||||| | || | ||||| | || || |||| ||| | || || Sbjct 3476064 GATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTCTT 3476005 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| || || || |||||||| Sbjct 3476004 TCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| || || ||||| ||| || | |||||| || Sbjct 3474636 GTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGTTTGCCG 3474577 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | ||||| || || || ||||||||||||||| || || ||| Sbjct 3474576 GCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTA 3474517 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||||| | || || || | || | || ||||| |||| || Sbjct 3474516 ACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTCAAGGTC 3474457 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 3474456 TTGACAAAGATCTGCAT 3474440 >seq51658 Length=184250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 118616 CTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGT 118675 |||||| || ||||| || |||||||| ||| ||| || ||| || | ||||| ||| Sbjct 30420 CTGCTGGTCCGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCGATGGT 30361 Query 118676 GTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735 ||||| | || ||||||| ||| | ||||| || || || ||||| || |||||||| Sbjct 30360 GTCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTG 30301 Query 118736 CAT 118738 ||| Sbjct 30300 CAT 30298 >seq26895 Length=1000185 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47170 GCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTG 47229 ||||||||||| || || ||||| ||||||||| | ||||||||||| ||||| || | Sbjct 288919 GCTTCAATGTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCC 288860 Query 47230 CGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 47289 | || ||| |||| | || || || ||||| || || | |||| || || Sbjct 288859 TGCTTGTTGGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAAC 288800 Query 47290 TCGTGCACGTGAAATCCGTG 47309 |||||||| ||||| ||||| Sbjct 288799 TCGTGCACATGAAAACCGTG 288780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433496310869404