Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq48925 102 5e-17 seq61578 96.9 2e-15 >seq48925 Length=1097090 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| ||||| ||| | || ||| ||||| ||||||||||||||| Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 515344 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || || ||||| ||||| ||||| || | | ||||| || || Sbjct 515343 AACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 515284 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| || |||| || | || | || | | ||| || Sbjct 515283 ATGCCCTCTTTGTCTTGAAT-TTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 515225 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| |||||||| || ||||| ||||| || ||||||||||| Sbjct 515224 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq61578 Length=3623949 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||||| ||| | |||| || ||||| |||||||| ||||| Sbjct 3476201 CCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAG 3476142 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||| ||||| ||||| || || || |||||||| ||| Sbjct 3476141 AGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGG 3476082 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||| || ||| |||||| | || | || | || | | ||| | Sbjct 3476081 ATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACGTTCTCC-ATAGTGTCTGAAGGTTCAA 3476024 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| || || || | ||| || || ||||||||||| Sbjct 3476023 CTTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| |||| || | || |||| ||| ||||| ||||| Sbjct 3474402 TCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAG 3474343 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | | ||||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 3474342 ATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 3474283 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | |||||||||||||| || | || || ||| Sbjct 3474282 TCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACA 3474223 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3474222 AAGATCTGCAT 3474212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| |||| || | || |||||||| ||||| ||||| Sbjct 3474630 TCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAG 3474571 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | | |||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 3474570 ATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 3474511 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | |||||||| ||||| || | || || ||| Sbjct 3474510 TCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACA 3474451 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3474450 AAGATCTGCAT 3474440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322823204978720