Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9460 255 5e-63 seq18715 161 8e-35 seq61578 111 1e-19 >seq9460 Length=1391182 Score = 255 bits (282), Expect = 5e-63 Identities = 364/505 (72%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 13160 CGGTCCCGCTCACCCCAAATACGCCCATGAAGCTGCTCGAGTCAAGAGTTTTCACAACTG 13219 ||| |||| |||||| ||||||| || || || || || | || | |||| Sbjct 538872 CGGCCCCGTGCACCCCCGATACGCCTCCGAGGCGGCGCGTCTCCGCACCTTCAAAGACTG 538931 Query 13220 GCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACACTGG 13279 ||| || || ||| |||| ||| ||| || ||||||| ||||| ||||||||||| || Sbjct 538932 GCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTCTACACCGG 538991 Query 13280 CTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGCCGGA 13339 | |||| ||||| || || |||||||| || |||||||| | || || |||||| || Sbjct 538992 CCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAGAACGA 539051 Query 13340 AGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGCTAGT 13399 || || || ||||| ||||| | | ||||||||||| ||||| ||||||||||| || Sbjct 539052 CGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAGCTGGT 539111 Query 13400 CAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCGTGTTACCCGG-----T 13454 || || | ||||||||||| ||||| || |||| ||||||| | | ||| Sbjct 539112 GAAAGGCCGCGACTACGTACAAAAAGTGATGTCGGAGGCCTGCGCCAT-CTCGGCACCCA 539170 Query 13455 GAGAACACTACCGTGTCAACAGCCGCGCCAGTGTCCGAGCCTATAC--CTGAGACAAAAA 13512 |||||| | | ||| || || || | | |||| || || | | ||| ||| Sbjct 539171 AAGAACA-GAGGGAGTC--CACCCTCG-CGGCGTCC--ACCGATCCCGCAAAGAGTAAAG 539224 Query 13513 TTGAAAAA---GAGCCCCAAGTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAG 13569 |||||| ||| | ||||| || ||||| ||||||||||||||||||| || | Sbjct 539225 GCGAAAAAGAGGAGAACGTCGTGGAGGACTCGAAGCTGTGCAAGATATGCTACGCGGAGG 539284 Query 13570 AGTGCATCGTGTGCTTCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGA 13629 || ||| |||||||||||| |||||||| |||||||||||||| |||||||| ||| || Sbjct 539285 AGCGCAACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGCGCGCTGT 539344 Query 13630 GTGTAGATAAGTGTCCGATGTGTCG 13654 || ||||| |||||||| || Sbjct 539345 CGACGGACAAGTGCCCGATGTGCCG 539369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 12873 GACTTGCGATTGGAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTG 12932 ||| ||||| ||||| | | | | || || || || |||||||| ||| ||| | Sbjct 538552 GACATGCGACGCGAAGAGGAGAGGCTCAAGACGTTCGACAAGTGGCCCGTGGACTTTCTT 538611 Query 12933 TCGCCGGAAACCATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGT 12992 ||||| || | || || || || |||||| | || | |||||||||| || Sbjct 538612 TCGCCCGAGCAGCTAGCGCGCAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGC 538671 Query 12993 TGTGCGTTTTGTAAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGAC 13052 || || ||||||||||| || || ||||| ||| ||||||||| || |||||| ||| Sbjct 538672 TGCGCCTTTTGTAAAGTCGAAATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGAC 538731 Query 13053 CATAAGAAGTGGGCTCCCCAATGTCCGTTTGTGA 13086 || || |||||| || || || || ||| ||| Sbjct 538732 CACCAGCGGTGGGCCCCGCAGTGCCCCTTTCTGA 538765 >seq18715 Length=1377716 Score = 161 bits (178), Expect = 8e-35 Identities = 623/969 (64%), Gaps = 11/969 (1%) Strand=Plus/Minus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 || || || || || || ||||| || | |||||| ||||| || || ||||| Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATA 6490 ||| | || ||||||| || ||| || || || | ||| || | ||||||||| Sbjct 1370906 CCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATA 1370847 Query 6491 GCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAA-CAAACGCCTCAACGC 6549 || || |||||||| | ||| | ||| || | || | ||| |||| ||| | Sbjct 1370846 GCTACACCCACCACAATCTTCTTAGGGTTGACGC-CTTGAGCAAGCAAATATTTCACACC 1370788 Query 6550 AAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGTA 6609 |||||| ||||| || |||| | || ||||| | || | || || |||| || | Sbjct 1370787 AAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATG 1370728 Query 6610 GCCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAGT 6668 || || ||||| ||||| || || || |||| || |||| | |||||||| | Sbjct 1370727 ACCGAGGGT-GTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGAT 1370669 Query 6669 CGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTGA 6728 | | || | || || |||| |||||||| | ||||| || | ||| | || | Sbjct 1370668 CCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAA 1370609 Query 6729 TGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGTC 6788 | ||| |||| || || || || |||| || || |||| |||||||| | Sbjct 1370608 TAGCGGAAGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCAC 1370549 Query 6789 TCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTG-TCAGCATCGCCCAACTTG 6847 ||| || ||| | | || || || | || || | || || | | Sbjct 1370548 GCAATTCCTTCATTAATTCAACGTAA----ACATCTCCGTCCTTAGGGCTTCCTAGGTCA 1370493 Query 6848 TCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTC 6907 ||| |||||||| || || || || ||||| || ||||| || |||||||| |||||| Sbjct 1370492 GGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTC 1370433 Query 6908 CACGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGC 6967 || || ||||| || ||| | || || | | ||| | |||| Sbjct 1370432 CAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCTTTGTCGGTG 1370373 Query 6968 ATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGATTG 7027 | | ||||||| ||| ||| ||||| || || ||||| ||||| || | || | Sbjct 1370372 AAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTCA 1370313 Query 7028 GGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTAC 7087 || || ||||||| | ||||||||| ||||| || || || || || || | | Sbjct 1370312 GGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCAG 1370253 Query 7088 GCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTG 7147 | || ||||| ||||| ||||| | ||| ||||| ||||| ||| |||||| Sbjct 1370252 GAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACTTTG 1370193 Query 7148 AAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGTTT 7206 ||||| || ||||| ||| |||| ||| | |||| |||| || | | || || Sbjct 1370192 AAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCG-ATCTCCTT 1370134 Query 7207 CAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCT 7266 || |||||||| ||||| || |||||||| || | || ||||||| | ||| | Sbjct 1370133 TAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGCGT 1370074 Query 7267 GAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCCAC 7326 ||||| || | || || || | || || | | | ||| |||||||| || || Sbjct 1370073 CAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTCAAC 1370014 Query 7327 AAAGTACGC 7335 ||||||||| Sbjct 1370013 AAAGTACGC 1370005 >seq61578 Length=3623949 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||| || ||||| || ||| ||||||||||||||||| || | ||| | || || Sbjct 3474193 TACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTC 3474134 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| |||| |||||||| ||||| | ||| ||| | || || | ||||||||||| Sbjct 3474133 CAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTG 3474074 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || |||||| | | ||||| | ||||||||| | ||| || ||||| Sbjct 3474073 GATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTT 3474014 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| || || ||||| ||| Sbjct 3474013 GCCCGTCAAGGTCTTCACGAAAATCTGCATTTTG 3473980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||| || ||||| || ||| ||||||||||||||||| || | ||| | || || Sbjct 3474421 TACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTC 3474362 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| ||||| |||||||| ||||| | ||| ||||| || || | ||||||||||| Sbjct 3474361 CAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 3474302 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || |||||| | | ||||| || || || | || || || || Sbjct 3474301 GATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTT 3474242 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||| ||||| Sbjct 3474241 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394770955921927